diff --git a/truvari/collapse.py b/truvari/collapse.py index f04506f8..1ba39782 100644 --- a/truvari/collapse.py +++ b/truvari/collapse.py @@ -486,8 +486,8 @@ def parse_args(args): help="Input variants") parser.add_argument("-o", "--output", type=str, default="/dev/stdout", help="Output vcf (stdout)") - parser.add_argument("-c", "--redundant-output", type=str, default="redundant.vcf", - help="Variants that collapsed into kept variants (redundant.vcf)") + parser.add_argument("-c", "--removed-output", type=str, default="removed.vcf", + help="Variants that collapsed into kept variants (%(default)s)") parser.add_argument("-f", "--reference", type=str, default=None, help="Indexed fasta used to call variants. Only needed with symbolic variants.") parser.add_argument("-k", "--keep", choices=["first", "maxqual", "common"], default="first",