Error in R_nc4_open: No such file or directory

[farh-an]

Dear @heroldn

I am trying to run Rscript climpact.ncdf.wrapper.r to calculate climate indices on sample netcdf data but i got following Error in R_nc4_open: No such file or directory

R version 4.2.3 (2023-03-15) -- "Shoerstop Beagle"

https://github.com/ARCCSS-extremes/climpact/

See the attached error message herewith and guide, many thanks

[heroldn]

Hi, have you checked that the file exists at the location specified in the error message? The message is saying that it is the wrong location. It looks like you've put a "." in front of your file path which is probably wrong too. I suspect you've modified the file location in the sample script. You shouldn't need to.

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On 26/09/2023 23:50 ACST farh-an ***@***.***> wrote: Dear @heroldn https://github.com/heroldn I am trying to run Rscript climpact.ncdf.wrapper.r to calculate climate indices on sample netcdf data but i got following Error in R_nc4_open: No such file or directory R version 4.2.3 (2023-03-15) -- "Shoerstop Beagle" https://github.com/ARCCSS-extremes/climpact/ See the attached error message herewith and guide, many thanks [2] https://user-images.githubusercontent.com/74012816/270688239-65635104-80fb-45ca-89fd-6fefdb98f525.png [1] https://user-images.githubusercontent.com/74012816/270688247-1326a997-dbb3-4c21-880a-8d9dac6b4e93.png — Reply to this email directly, view it on GitHub #108, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACW3FALLHX4KSL6UU4UIEV3X4LQERANCNFSM6AAAAAA5HZ644M. You are receiving this because you were mentioned.Message ID: ***@***.***>

[farh-an]

Hi @heroldn I check and correct the location for sample file and it works this time but i got another error message saying error in library(LMoFit): there is no package called "LMoFit" see attached image 1 herewith;

I tried to install package(LMoFit) and its dependency "sf" but I got two warning messages, see attached image below and guide, many thanks

[farh-an]

@heroldn Is there other way around to install package(LMoFit) and its dependency "sf" ?

[heroldn]

Can you search your linux package manager for GDAL development files. Installing that might help. e.g. I'm in Debian and there's libgdal-dev. Imagine *buntu is the same.

[farh-an]

Do i need to install GDAL development files inside my r1_env?

[farh-an]

Dear @heroldn I tried to install gdal using linux package manager see image below for installed gdal version and conflicts

[heroldn]

Is that in an environment of some sort like conda? I'm not sure how system packages interact with those. I'm not sure why it mentions pypy either. I think you'll have to get local support to install lmofit then, as I'm not familiar with your system.

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On 27/09/2023 11:35 GMT farh-an ***@***.***> wrote: Dear @heroldn https://github.com/heroldn I tried to install gdal using linux package manager see image below for installed gdal version and conflicts [4] https://user-images.githubusercontent.com/74012816/270964232-80155b5a-8fa7-4062-b569-6fc98f130ac4.png — Reply to this email directly, view it on GitHub #108 (comment), or unsubscribe https://github.com/notifications/unsubscribe-auth/ACW3FAM7ZY674F43NTSR5WDX4QFRHANCNFSM6AAAAAA5HZ644M. You are receiving this because you were mentioned.Message ID: ***@***.***>

[farh-an]

Okay thanks @heroldn I will ask local support to install lmofit