Code

Add functions for Seurat conversion#15

Code

Merged

jashapiro merged 25 commits intomainAlexsLemonade/rOpenScPCA:mainfrom jashapiro/8-seurat-conversionAlexsLemonade/rOpenScPCA:jashapiro/8-seurat-conversionCopy head branch name to clipboardDec 13, 2024

+908-403

Commits

Commits on Dec 5, 2024

• Add function for merging duplicate gene names

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Commits on Dec 6, 2024

• add tests and working functions

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• rename merge to sum-duplicates

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• Add seurat_compatible option to conversion

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• Add make-seurat functions and tests

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• document

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• Apply suggestions from code review

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• responses to initial review

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• add altexp handling

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Commits on Dec 9, 2024

• Warn about gene id conversions,

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• Add Seurat v5 checks

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• add download script for test data

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• Apply suggestions from code review

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Commits on Dec 10, 2024

• add filtered test data

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• Support filtered data

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• hvg fixes for summing

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• add handling of altexps with underscores in names

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• update documentation

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• pre-commit update

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• add examples

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• docs update

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Commits on Dec 12, 2024

• Update licensing to remove build note

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• clean up renv

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Commits on Dec 13, 2024

• work around renv bug

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  914e500

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• add a quick check for merged data

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