diff --git a/docs/download_files.md b/docs/download_files.md index fa76f02..36a24eb 100644 --- a/docs/download_files.md +++ b/docs/download_files.md @@ -178,7 +178,7 @@ For project downloads, the counts and QC files will be organized by the _set_ of These sample set folders are named with an underscore-separated list of the sample ids for the libraries within, _e.g._, `SCPCS999990_SCPCS999991_SCPCS999992`. Bulk RNA-seq data, if present, will follow the [same format as bulk RNA-seq for single-sample libraries](#download-folder-structure-for-project-downloads). -![multiplexed project download folder](images/multiplexed-download-folder.png){width="600"} +![multiplexed project download folder](images/multiplexed-download-folder.png){width="750"} Because we do not perform demultiplexing to separate cells from multiplexed libraries into sample-specific count matrices, sample downloads from a project with multiplexed data will include all libraries that contain the sample of interest, but these libraries _will still contain cells from other samples_. diff --git a/docs/images/multiplexed-download-folder.png b/docs/images/multiplexed-download-folder.png index 837a833..8a0d741 100644 Binary files a/docs/images/multiplexed-download-folder.png and b/docs/images/multiplexed-download-folder.png differ