From 5ce6c75fe7e694901dba37783a83e12707d792c1 Mon Sep 17 00:00:00 2001 From: Ally Hawkins <54039191+allyhawkins@users.noreply.github.com> Date: Mon, 11 Mar 2024 09:33:16 -0500 Subject: [PATCH] update tags to v0.7.3 --- external-instructions.md | 6 +++--- internal-instructions.md | 2 +- nextflow.config | 2 +- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/external-instructions.md b/external-instructions.md index d67308a2..82c2bf9a 100644 --- a/external-instructions.md +++ b/external-instructions.md @@ -78,12 +78,12 @@ Using the above command will run the workflow from the `main` branch of the work To update to the latest released version you can run `nextflow pull AlexsLemonade/scpca-nf` before the `nextflow run` command. To be sure that you are using a consistent version, you can specify use of a release tagged version of the workflow, set below with the `-r` flag. -The command below will pull the `scpca-nf` workflow directly from Github using the `v0.7.2` version. +The command below will pull the `scpca-nf` workflow directly from Github using the `v0.7.3` version. Released versions can be found on the [`scpca-nf` repository releases page](https://github.com/AlexsLemonade/scpca-nf/releases). ```sh nextflow run AlexsLemonade/scpca-nf \ - -r v0.7.2 \ + -r v0.7.3 \ -config \ -profile ``` @@ -312,7 +312,7 @@ If you will be analyzing spatial expression data, you will also need the Cell Ra If your compute nodes do not have internet access, you will likely have to pre-pull the required container images as well. When doing this, it is important to be sure that you also specify the revision (version tag) of the `scpca-nf` workflow that you are using. -For example, if you would run `nextflow run AlexsLemonade/scpca-nf -r v0.7.2`, then you will want to set `-r v0.7.2` for `get_refs.py` as well to be sure you have the correct containers. +For example, if you would run `nextflow run AlexsLemonade/scpca-nf -r v0.7.3`, then you will want to set `-r v0.7.3` for `get_refs.py` as well to be sure you have the correct containers. By default, `get_refs.py` will download files and images associated with the latest release. If your system uses Docker, you can add the `--docker` flag: diff --git a/internal-instructions.md b/internal-instructions.md index 9d326bf9..37acf229 100644 --- a/internal-instructions.md +++ b/internal-instructions.md @@ -82,7 +82,7 @@ Please refer to our [`CONTRIBUTING.md`](CONTRIBUTING.md#stub-workflows) for more When running the workflow for a project or group of samples that is ready to be released on ScPCA portal, please use the tag for the latest release: ``` -nextflow run AlexsLemonade/scpca-nf -r v0.7.2 -profile ccdl,batch --project SCPCP000000 +nextflow run AlexsLemonade/scpca-nf -r v0.7.3 -profile ccdl,batch --project SCPCP000000 ``` ### Processing example data diff --git a/nextflow.config b/nextflow.config index a9a9f810..46dc429b 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest{ homePage = 'https://github.com/AlexsLemonade/scpca-nf' mainScript = 'main.nf' defaultBranch = 'main' - version = 'v0.7.2' + version = 'v0.7.3' } // global parameters for workflows