Sync development into main
#750
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updates: - [github.com/astral-sh/ruff-pre-commit: v0.3.2 → v0.3.3](astral-sh/ruff-pre-commit@v0.3.2...v0.3.3) - [github.com/pre-commit/mirrors-prettier: v3.0.3 → v4.0.0-alpha.8](pre-commit/mirrors-prettier@v3.0.3...v4.0.0-alpha.8)
[pre-commit.ci] pre-commit autoupdate
changed argument to predict_cellassign to make things conistent
Change Anndata extension to h5ad
Co-authored-by: Joshua Shapiro <[email protected]>
Make example ids consistent
…g-when-no-cells Skip processing if no cells remain after empty droplet filtering
Co-authored-by: Joshua Shapiro <[email protected]>
Skip CellAssign if only 1 cell
…ecify-demux-version
This reverts commit ecd5de5.
This reverts commit 71b3f63.
…version Account for demultiplexing without genetic demultiplexing
Account for .h5ad in output feature file
…ssing-samples Account for no cells being assigned to a sample when demultiplexing
Update tags to v0.8.1
sjspielman
approved these changes
Apr 23, 2024
This was referenced Apr 23, 2024
|
Closing this in favor of #752 |
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Continuing towards #748, this syncs all the changes in
developmentwithmain. This includes a bunch of small fixes and the change to use.h5adfile extensions.