Merge pull request #286 from AlexsLemonade/jashapiro/round_fry

Add rounding to alevin-fry import
AlexsLemonade · Oct 30, 2024 · e1c1e2f · e1c1e2f
2 parents 3cd4b2a + 14466da
commit e1c1e2f
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: scpcaTools
 Type: Package
 Title: Single cell data tools for ScPCA
-Version: 0.4.0
+Version: 0.4.1
 Authors@R: c(
     person("Ally", "Hawkins",
            email = "[email protected]",

diff --git a/R/read_alevin.R b/R/read_alevin.R
@@ -118,6 +118,9 @@ read_alevin <- function(
       fryDir = quant_dir,
       outputFormat = assay_formats
     )
+    if (round_counts) {
+      assays(sce) <- lapply(assays(sce), round)
+    }
   } else {
     # read in any non-USA formatted alevin-fry data or Alevin data
     counts <- read_tximport(quant_dir)