Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add demuxmix functions #282

Open
jashapiro opened this issue Oct 17, 2024 · 0 comments
Open

Add demuxmix functions #282

jashapiro opened this issue Oct 17, 2024 · 0 comments

Comments

@jashapiro
Copy link
Member

Since we last looked at demultiplexing methods, a number of new methods and packages have come out that we might want to look into. As a first step, we can add functions to perform different multiplexing methods to scpcaTools.

The first of these we might want to look at is demuxmix, which uses a mixture model to better model the hashtag oligos. This method performed well in a recent review paper: Howett et al. 2023.

Following this addition, we can do some evaluations to see if we will want to add this method to scpca-nf.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant