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README.md
README.md
 
 
modified_xantho_fastaai2.db
modified_xantho_fastaai2.db
 
 
qsub_test_bad_input.txt
qsub_test_bad_input.txt
 
 
qsub_test_input.txt
qsub_test_input.txt
 
 
qsub_test_output_matrix_wheader.csv
qsub_test_output_matrix_wheader.csv
 
 
subset_db.py
subset_db.py
 
 
xanthodb_aji.bin
xanthodb_aji.bin
 
 
xanthodb_aji_matrix.csv
xanthodb_aji_matrix.csv
 
 
xanthodb_aji_matrix_wheader.csv
xanthodb_aji_matrix_wheader.csv
 
 
xanthodb_e_array.bin
xanthodb_e_array.bin
 
 
xanthodb_e_size.bin
xanthodb_e_size.bin
 
 
xanthodb_e_starts.bin
xanthodb_e_starts.bin
 
 
xanthodb_f_array.bin
xanthodb_f_array.bin
 
 
xanthodb_gpe_ends.bin
xanthodb_gpe_ends.bin
 
 
xanthodb_gpe_starts.bin
xanthodb_gpe_starts.bin
 
 
xanthodb_jac.bin
xanthodb_jac.bin
 
 
xanthodb_lc_array.bin
xanthodb_lc_array.bin
 
 
xanthodb_lp_array.bin
xanthodb_lp_array.bin
 
 
xanthodb_sorted_e_array.bin
xanthodb_sorted_e_array.bin
 
 
xanthodb_t_matrix.bin
xanthodb_t_matrix.bin
 
 
xdb_qry_subset_aji.bin
xdb_qry_subset_aji.bin
 
 
xdb_qry_subset_jac.bin
xdb_qry_subset_jac.bin
 
 
xdb_qt_aji.bin
xdb_qt_aji.bin
 
 
xdb_qt_combo_t_matrix.bin
xdb_qt_combo_t_matrix.bin
 
 
xdb_qt_f_array.bin
xdb_qt_f_array.bin
 
 
xdb_qt_jac.bin
xdb_qt_jac.bin
 
 
xdb_qt_lc_array.bin
xdb_qt_lc_array.bin
 
 
xdb_qt_lp_array.bin
xdb_qt_lp_array.bin
 
 
xdb_qt_sorted_e_array.bin
xdb_qt_sorted_e_array.bin
 
 
xdb_qt_t_matrix.bin
xdb_qt_t_matrix.bin
 
 
xdb_subset1.db
xdb_subset1.db
 
 
xdb_subset1_aji.bin
xdb_subset1_aji.bin
 
 
xdb_subset1_aji_matrix_wheader.csv
xdb_subset1_aji_matrix_wheader.csv
 
 
xdb_subset1_f_array.bin
xdb_subset1_f_array.bin
 
 
xdb_subset1_jac.bin
xdb_subset1_jac.bin
 
 
xdb_subset1_lc_array.bin
xdb_subset1_lc_array.bin
 
 
xdb_subset1_lp_array.bin
xdb_subset1_lp_array.bin
 
 
xdb_subset1_sorted_e_array.bin
xdb_subset1_sorted_e_array.bin
 
 
xdb_subset1_t_matrix.bin
xdb_subset1_t_matrix.bin
 
 
xdb_subset2.db
xdb_subset2.db
 
 
xdb_subset2_aji.bin
xdb_subset2_aji.bin
 
 
xdb_subset2_aji_matrix_wheader.csv
xdb_subset2_aji_matrix_wheader.csv
 
 
xdb_subset2_f_array.bin
xdb_subset2_f_array.bin
 
 
xdb_subset2_jac.bin
xdb_subset2_jac.bin
 
 
xdb_subset2_lc_array.bin
xdb_subset2_lc_array.bin
 
 
xdb_subset2_lp_array.bin
xdb_subset2_lp_array.bin
 
 
xdb_subset2_sorted_e_array.bin
xdb_subset2_sorted_e_array.bin
 
 
xdb_subset2_t_matrix.bin
xdb_subset2_t_matrix.bin
 
 
xdb_subset_combo12.db
xdb_subset_combo12.db
 
 

README.md

Dataset details

subset1 genomes

Xanthomonas_albilineans_GCA_000962915_1.fna.gz
Xanthomonas_albilineans_GCA_000962945_1.fna.gz
Xanthomonas_albilineans_GCA_000963065_1.fna.gz
Xanthomonas_albilineans_GCA_000963195_1.fna.gz

subset2 genomes

Xanthomonas_albilineans_GCA_000962925_1.fna.gz
Xanthomonas_albilineans_GCA_000963025_1.fna.gz
Xanthomonas_albilineans_GCA_000963155_1.fna.gz
_Pseudomonas__cissicola_GCA_008801575_1.fna.gz