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1. protein_mutation_scoring protein_mutation_scoring Public

   Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2

   Python 5 1

2. transformers_proteins_and_persistent_homology transformers_proteins_and_persistent_homology Public

   Transformers, Protein Sequences, and Persistent Homology

   Jupyter Notebook 5 1

3. esm2_LoRA_binding_sites esm2_LoRA_binding_sites Public

   Training a Low Rank Adaptation of the protein language model ESM-2 for RNA binding site predictor

   Python 6

4. anomaly_detection_persistent_homology anomaly_detection_persistent_homology Public

   Detecting anomalous texts with persistent homology of context vectors computed by individual attention heads in language transformers

   Jupyter Notebook 1

5. esm2_masked_lm esm2_masked_lm Public

   Various Ideas for Protein Masked LM with ESMFold/ESM-2

   Jupyter Notebook 14 2

6. hebrew_context_persistent_homology hebrew_context_persistent_homology Public

   Persistent homology of context vectors computed by individual attention heads in Hebrew language models

   Jupyter Notebook