DESCRIPTION

Package: MAGMA.Celltyping
Type: Package
Title: MAGMA.Celltyping
Version: 1.0.0
Date: 2018-8-01
Author: Dr Nathan Skene
Maintainer: Nathan Skene <nathan.skene@gmail.com>
Description: Used to test for cell type enrichments using MAGMA.
License: Artistic-2.0
LazyData: TRUE
Depends: R(>= 3.2)
VignetteBuilder: knitr
Imports: EWCE, 
        One2One,
        R.utils,
        ggdendro, cowplot, dplyr, data.table,
        ggplot2, stringr, tibble,
        SNPlocs.Hsapiens.dbSNP144.GRCh38,
        magrittr, grDevices, limma,
        BSgenome, BiocGenerics, GenomeInfoDb, S4Vectors, gridExtra, rlang,
        SNPlocs.Hsapiens.dbSNP144.GRCh37, purrr, usethis
Suggests: knitr, BiocStyle,
    rmarkdown
Remotes: nathanskene/ewce,
    nathanskene/one2one
SystemRequirements: A system installation of MAGMA (https://ctg.cncr.nl/software/magma) is required 
biocViews: GeneExpression, Transcription, GWAS Summary Statistics,
        Genetics, scRNASeq, Single Cell RNAseq,
        BiomedicalInformatics, FunctionalGenomics
RoxygenNote: 7.1.0
Encoding: UTF-8