From 1bb3905212036110892df550f20d07ea16a5c0df Mon Sep 17 00:00:00 2001 From: napakalas Date: Wed, 12 Feb 2025 11:50:47 +1300 Subject: [PATCH 1/5] Update aliases from "urinary bladder" to "fundus of the urinary bladder" for a more specific match. --- connectivity_terms_female.json | 29 ++++++----------------------- connectivity_terms_male.json | 23 +++-------------------- 2 files changed, 9 insertions(+), 43 deletions(-) diff --git a/connectivity_terms_female.json b/connectivity_terms_female.json index 9838821..0874eaf 100644 --- a/connectivity_terms_female.json +++ b/connectivity_terms_female.json @@ -486,16 +486,15 @@ "id": [ "UBERON:0035965", [ - "UBERON:0001981", - "UBERON:0001255" + "UBERON:0001258" ] ], - "name": "wall of blood vessel/blood vessel/urinary bladder", + "name": "wall of blood vessel/neck of urinary bladder", "aliases": [ [ "UBERON:0035965", [ - "ILX:0793664" + "ILX:0793663" ] ] ] @@ -504,16 +503,15 @@ "id": [ "UBERON:0035965", [ - "UBERON:0001981", - "UBERON:0001258" + "UBERON:0006082" ] ], - "name": "wall of blood vessel/blood vessel/neck of urinary bladder", + "name": "wall of blood vessel/fundus urinary bladder", "aliases": [ [ "UBERON:0035965", [ - "ILX:0793663" + "ILX:0793664" ] ] ] @@ -1334,21 +1332,6 @@ ] ] }, - { - "id": [ - "ILX:0793233", - [ - "UBERON:0000407" - ] - ], - "name": "interganglionic branch of inferior cervical ganglion to first thoracic ganglion/sympathetic trunk", - "aliases": [ - [ - "ILX:0738291", - [] - ] - ] - }, { "id": [ "UBERON:0009853", diff --git a/connectivity_terms_male.json b/connectivity_terms_male.json index d480ef6..171a25c 100644 --- a/connectivity_terms_male.json +++ b/connectivity_terms_male.json @@ -493,11 +493,10 @@ "id": [ "UBERON:0035965", [ - "UBERON:0001981", "UBERON:0001258" ] ], - "name": "wall of blood vessel/blood vessel/neck of urinary bladder", + "name": "wall of blood vessel/neck of urinary bladder", "aliases": [ [ "UBERON:0035965", @@ -511,11 +510,10 @@ "id": [ "UBERON:0035965", [ - "UBERON:0001981", - "UBERON:0001255" + "UBERON:0006082" ] ], - "name": "wall of blood vessel/blood vessel/urinary bladder", + "name": "wall of blood vessel/fundus urinary bladder", "aliases": [ [ "UBERON:0035965", @@ -1366,21 +1364,6 @@ ] ] }, - { - "id": [ - "ILX:0793233", - [ - "UBERON:0000407" - ] - ], - "name": "interganglionic branch of inferior cervical ganglion to first thoracic ganglion/sympathetic trunk", - "aliases": [ - [ - "ILX:0738291", - [] - ] - ] - }, { "id": [ "UBERON:0001647", From cf36f96fff05248dcc17a205c75d91679c9a2856 Mon Sep 17 00:00:00 2001 From: napakalas Date: Wed, 12 Feb 2025 11:53:31 +1300 Subject: [PATCH 2/5] Assign features with no laterality to a new property called "noLaterality". --- properties.json | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/properties.json b/properties.json index b23e8e8..05360a0 100644 --- a/properties.json +++ b/properties.json @@ -2273,7 +2273,8 @@ "class": "brain_24" }, "brain_25-1": { - "class": "brain_25" + "class": "brain_25", + "noLaterality": true }, "brain_25-2": { "class": "brain_25" @@ -2282,13 +2283,15 @@ "class": "brain_26" }, "brain_26-2": { - "class": "brain_26" + "class": "brain_26", + "noLaterality": true }, "brain_27-1": { "class": "brain_27" }, "brain_27-2": { - "class": "brain_27" + "class": "brain_27", + "noLaterality": true }, "brain_28-1": { "class": "brain_28" From e8874b27368204a16d0f905c31750cb5cbb0b1e5 Mon Sep 17 00:00:00 2001 From: napakalas Date: Wed, 12 Feb 2025 11:55:42 +1300 Subject: [PATCH 3/5] Remove contained_in from T1 - T6 of XX_ventral_root_ramus as it caused incorrect path rendering. --- properties.json | 18 ------------------ 1 file changed, 18 deletions(-) diff --git a/properties.json b/properties.json index 05360a0..e967403 100644 --- a/properties.json +++ b/properties.json @@ -6519,9 +6519,6 @@ "connects": [ "T1_spinal", "T1_ventral_root_end" - ], - "contained-in": [ - "S48_T1" ] }, { @@ -6529,9 +6526,6 @@ "connects": [ "T2_spinal", "T2_ventral_root_end" - ], - "contained-in": [ - "S49_T2" ] }, { @@ -6539,9 +6533,6 @@ "connects": [ "T3_spinal", "T3_ventral_root_end" - ], - "contained-in": [ - "S49_T3" ] }, { @@ -6549,9 +6540,6 @@ "connects": [ "T4_spinal", "T4_ventral_root_end" - ], - "contained-in": [ - "S49_T4" ] }, { @@ -6559,9 +6547,6 @@ "connects": [ "T5_spinal", "T5_ventral_root_end" - ], - "contained-in": [ - "S49_T5" ] }, { @@ -6569,9 +6554,6 @@ "connects": [ "T6_spinal", "T6_ventral_root_end" - ], - "contained-in": [ - "S49_T6" ] }, { From aafa4e24f6e5040fd452d471c2dff688d15d6794 Mon Sep 17 00:00:00 2001 From: napakalas Date: Wed, 12 Feb 2025 18:00:40 +1300 Subject: [PATCH 4/5] Rename property from `noLaterality` to `unrouted`. --- properties.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/properties.json b/properties.json index e967403..b9e0b38 100644 --- a/properties.json +++ b/properties.json @@ -2274,7 +2274,7 @@ }, "brain_25-1": { "class": "brain_25", - "noLaterality": true + "unrouted": true }, "brain_25-2": { "class": "brain_25" @@ -2284,14 +2284,14 @@ }, "brain_26-2": { "class": "brain_26", - "noLaterality": true + "unrouted": true }, "brain_27-1": { "class": "brain_27" }, "brain_27-2": { "class": "brain_27", - "noLaterality": true + "unrouted": true }, "brain_28-1": { "class": "brain_28" From e6c3dc64a7a4095b8d1457598dcad5c54aa39cbc Mon Sep 17 00:00:00 2001 From: napakalas Date: Wed, 12 Feb 2025 18:03:57 +1300 Subject: [PATCH 5/5] Adjust the pink dots in the left and right heart ventricles and heart atrium. --- human_flatmap_female.svg | 120 +++++++++++++++++++------------------- human_flatmap_male.svg | 121 +++++++++++++++++++-------------------- 2 files changed, 120 insertions(+), 121 deletions(-) diff --git a/human_flatmap_female.svg b/human_flatmap_female.svg index e068815..058ec6e 100644 --- a/human_flatmap_female.svg +++ b/human_flatmap_female.svg @@ -23732,6 +23732,30 @@ + + .id(cardio_24-1) + + + .id(cardio_25-1) + + + .id(cardio_28-2) + + + .id(cardio_27-1) + + + .id(cardio_29-4) + + + .id(cardio_31-1) + + + .id(cardio_33-1) + + + .id(cardio_34-1) + .id(cardio_11-1) @@ -23767,6 +23791,18 @@ + + .id(cardio_29-3) + + + .id(cardio_28-4) + + + .id(cardio_23-1) + + + .id(cardio_22-1) + .id(cardio_9-1) @@ -23802,6 +23838,18 @@ + + .id(cardio_29-1) + + + .id(cardio_28-3) + + + .id(cardio_18-1) + + + .id(cardio_19-1) + .id(cardio_10-1) @@ -23837,6 +23885,18 @@ + + .id(cardio_29-2) + + + .id(cardio_28-1) + + + .id(cardio_21-1) + + + .id(cardio_20-1) + @@ -42764,66 +42824,6 @@ .id(digestive_91-1) - - .id(cardio_29-3) - - - .id(cardio_28-4) - - - .id(cardio_23-1) - - - .id(cardio_22-1) - - - .id(cardio_34-1) - - - .id(cardio_33-1) - - - .id(cardio_31-1) - - - .id(cardio_29-4) - - - .id(cardio_27-1) - - - .id(cardio_29-2) - - - .id(cardio_28-2) - - - .id(cardio_28-1) - - - .id(cardio_25-1) - - - .id(cardio_24-1) - - - .id(cardio_21-1) - - - .id(cardio_20-1) - - - .id(cardio_29-1) - - - .id(cardio_28-3) - - - .id(cardio_18-1) - - - .id(cardio_19-1) - .id(urinary_15-1) diff --git a/human_flatmap_male.svg b/human_flatmap_male.svg index a55e7bb..d192ed3 100644 --- a/human_flatmap_male.svg +++ b/human_flatmap_male.svg @@ -4177,6 +4177,30 @@ + + .id(cardio_34-1) + + + .id(cardio_33-1) + + + .id(cardio_31-1) + + + .id(cardio_29-4) + + + .id(cardio_27-1) + + + .id(cardio_28-2) + + + .id(cardio_25-1) + + + .id(cardio_24-1) + .id(cardio_11-1) @@ -4212,6 +4236,18 @@ + + .id(cardio_29-3) + + + .id(cardio_28-4) + + + .id(cardio_23-1) + + + .id(cardio_22-1) + .id(cardio_10-1) @@ -4246,7 +4282,18 @@ - + + .id(cardio_20-1) + + + .id(cardio_21-1) + + + .id(cardio_28-1) + + + .id(cardio_29-2) + .id(cardio_9-1) @@ -4282,6 +4329,18 @@ + + .id(cardio_29-1) + + + .id(cardio_28-3) + + + .id(cardio_18-1) + + + .id(cardio_19-1) + @@ -23923,66 +23982,6 @@ .id(digestive_91-1) - - .id(cardio_29-3) - - - .id(cardio_28-4) - - - .id(cardio_23-1) - - - .id(cardio_22-1) - - - .id(cardio_34-1) - - - .id(cardio_33-1) - - - .id(cardio_31-1) - - - .id(cardio_29-4) - - - .id(cardio_27-1) - - - .id(cardio_29-2) - - - .id(cardio_28-2) - - - .id(cardio_28-1) - - - .id(cardio_25-1) - - - .id(cardio_24-1) - - - .id(cardio_21-1) - - - .id(cardio_20-1) - - - .id(cardio_29-1) - - - .id(cardio_28-3) - - - .id(cardio_18-1) - - - .id(cardio_19-1) - .id(urinary_17-1)