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How do we get started the pipeline #4

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ld9866 opened this issue Jan 4, 2023 · 1 comment
Open

How do we get started the pipeline #4

ld9866 opened this issue Jan 4, 2023 · 1 comment

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@ld9866
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ld9866 commented Jan 4, 2023

Dear ASLeonard:
Thank you very much for sharing your work, I am very interested in it after reading your article.
Now we want to try on other species, but we find it very difficult to start the test.
Could you provide a small test file or tell us how to start the test in a short word?
Thank you!

@ld9866
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ld9866 commented Jan 5, 2023

Dear ASLeonard:
We found that a test file was prepared in your file, and we used it for testing. Before that, we had finished the required software, but we found that there were still some problems . Could you please help us?
Code:
snakemake --dryrun --snakefile Snakefile --configfile .test/config.yaml
Error:
RuleException in line 41 of /home/test/snakepit/construct_pangenomes.smk:
Resources values have to be integers or callables
File "/home/test/Snakefile", line 16, in
File "/home/test/snakepit/construct_pangenomes.smk", line 41, in

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