Special branch of mgutils.js - mgutils.js path

[agolicz]

Hi,
We are hoping to use the pipeline for comparison of different methods for plant pangenome construction.

However we get stuck at this step:

#needs special branch of mgutils.js
{{ vg convert -r 0 -g {input.gfa} -f ; paste {input.paths} | mgutils.js path <(echo -e "{params.samples}") - | sed 's/s//g' ; }} > {output}

It appears that a special brach of mgutils.js is required, but it is not specified where to find it.

Would you be able to help?

All the best,
Agnieszka

[ValentinaPeona]

I'm also interested in this. Did you find out which version of mgutils is needed @agolicz ?

[ValentinaPeona]

I think I found it, it should be this one that indeed has the command "path": https://github.com/ASLeonard/minigraph/blob/master/misc/mgutils.js#L1408