Navigation
Navigation
padding-left: .2em; } -
+
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.AnyMacro
@@ -418,7 +419,7 @@
diff --git a/api/AnyPyProcess.html b/api/AnyPyProcess.html
index f9f4937..bf2c6a6 100644
--- a/api/AnyPyProcess.html
+++ b/api/AnyPyProcess.html
@@ -7,7 +7,7 @@
- anypytools.AnyPyProcess — AnyPyTools 1.7.1 documentation
+ anypytools.AnyPyProcess — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.AnyPyProcess
@@ -102,7 +103,7 @@
anypytools.AnyMacro¶
See anypytools.macro_commands for a list of classes that generate macro commands.
-
@@ -354,7 +355,7 @@
Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
diff --git a/api/abcutils.html b/api/abcutils.html
index 0101e92..fd60d5e 100644
--- a/api/abcutils.html
+++ b/api/abcutils.html
@@ -7,7 +7,7 @@
- anypytools.abcutils — AnyPyTools 1.7.1 documentation
+ anypytools.abcutils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.abcutils
@@ -102,7 +103,7 @@
anypytools.AnyPyProcess¶
-
@@ -326,7 +327,7 @@
Next page
@@ -381,7 +382,7 @@This Page
Navigation
- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -390,7 +391,7 @@Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -437,7 +438,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.abcutils
@@ -446,7 +447,7 @@
diff --git a/api/anydatah5_generator.html b/api/anydatah5_generator.html
index 337b99d..17281ab 100644
--- a/api/anydatah5_generator.html
+++ b/api/anydatah5_generator.html
@@ -7,7 +7,7 @@
- anypytools.datautils.anydatah5_generator — AnyPyTools 1.7.1 documentation
+ anypytools.datautils.anydatah5_generator — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils.anydatah5_generator
@@ -102,7 +103,7 @@
anypytools.abcutils¶
Created on Fri Oct 19 21:14:59 2012 @author: Morten
@@ -382,7 +383,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
diff --git a/api/anyoutputfile_generator.html b/api/anyoutputfile_generator.html
index 28d342c..909f511 100644
--- a/api/anyoutputfile_generator.html
+++ b/api/anyoutputfile_generator.html
@@ -7,7 +7,7 @@
- anypytools.datautils.anyoutputfile_generator — AnyPyTools 1.7.1 documentation
+ anypytools.datautils.anyoutputfile_generator — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils.anyoutputfile_generator
@@ -102,7 +103,7 @@
anypytools.datautils.anydatah5_generator¶
-
@@ -158,7 +159,7 @@
Next page
@@ -213,7 +214,7 @@This Page
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- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -222,7 +223,7 @@Navigation
Navigation
Navigation
padding-left: .2em; } -
+
diff --git a/api/datautils.html b/api/datautils.html
index fdca962..b315e99 100644
--- a/api/datautils.html
+++ b/api/datautils.html
@@ -7,7 +7,7 @@
- anypytools.datautils — AnyPyTools 1.7.1 documentation
+ anypytools.datautils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils
@@ -102,7 +103,7 @@
anypytools.datautils.anyoutputfile_generator¶
-
@@ -162,7 +163,7 @@
Next page
@@ -217,7 +218,7 @@This Page
Navigation
- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -226,7 +227,7 @@Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -267,7 +268,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils
@@ -276,7 +277,7 @@
diff --git a/api/h5py_wrapper.html b/api/h5py_wrapper.html
index f8d0f41..43a6686 100644
--- a/api/h5py_wrapper.html
+++ b/api/h5py_wrapper.html
@@ -7,7 +7,7 @@
- anypytools.h5py_wrapper — AnyPyTools 1.7.1 documentation
+ anypytools.h5py_wrapper — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.h5py_wrapper
@@ -102,7 +103,7 @@ 
+
+Don't panic
+:::
+
+Its main purpose is to launch AnyBody simulations and collect results. It has a
+scheduler to launch multiple instances of AMS utilising computers with multiple
+cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
+things which is not possible directly within the AnyBody Modeling System.
+
+## Installation
+
+```{toctree}
+:maxdepth: 1
+:titlesonly: true
+
+dependencies
+install_guide
+```
+
+## Guides
+
+The tutorials below are also available as a set of
+[Jupyter Notebooks](http://nbviewer.jupyter.org/github/AnyBody-Research-Group/AnyPyTools/blob/master/docs/Tutorial/00_AnyPyTools_tutorial.ipynb)
+
+```{toctree}
+:maxdepth: 1
+:titlesonly: true
+
+Tutorial/01_Getting_started_with_anypytools.ipynb
+Tutorial/02_Generating_macros.ipynb
+Tutorial/03_Working_with_output_from_Anybody.ipynb
+Tutorial/04_Batch_processing_multiple_models.ipynb
+Tutorial/05_Monte_Carlo_studies_etc.ipynb
+Tutorial/06_Tips&Tricks.ipynb
+```
+
+## Documentation
+
+```{toctree}
+:maxdepth: 1
+:titlesonly: true
+
+api/index
+pytest_plugin
+```
+
+## How to cite?
+
+If you use the library for publications please cite as:
+
+```{rst-class} without-title
+```
+
+:::{seealso}
+Lund et al., (2019). AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System. Journal of Open Source Software, 4(33), 1108,
+:::
+
+## Development
+
+I greatly appreciate any contributions to AnyPyTools! If you would like to contribute,
+it is as easy as forking the repository on GitHub, making your changes, and
+issuing a pull request. If you have any questions about this process don't
+hesitate to ask.
+
+See the {ref}`Developer's Guide ` for more information about contributing.
+
+```{toctree}
+:maxdepth: 1
+:titlesonly: true
+
+devguide
+changelog
+```
+
+## Usefull links
+
+If you have questions or comments, please contact the author directly, or
+open a [new issue on GitHub](https://github.com/AnyBody-Research-Group/AnyPyTools/issues/new)
+
+- [Jupyter Notebook tutorial](https://nbviewer.jupyter.org/github/AnyBody-Research-Group/AnyPyTools/blob/master/docs/Tutorial/00_AnyPyTools_tutorial.ipynb)
+- [Documentation](https://anybody-research-group.github.io/anypytools-docs)
+- [Gitter](https://gitter.im/AnyBody-Research-Group/AnyPyTools)
+- [GitHub Repository](https://github.com/AnyBody-Research-Group/AnyPyTools)
+- {ref}`genindex`
+- {ref}`modindex`
+- {ref}`search`
diff --git a/dev/_sources/index.rst.txt b/dev/_sources/index.rst.txt
deleted file mode 100644
index b3cc967..0000000
--- a/dev/_sources/index.rst.txt
+++ /dev/null
@@ -1,101 +0,0 @@
-AnyPyTools' documentation!
-======================================
-
-AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from
-Python.
-
-.. image:: _static/relax.png
- :alt: Don't panic
- :align: center
-
-Its main purpose is to launch AnyBody simulations and collect results. It has a
-scheduler to launch multiple instances of AMS utilising computers with multiple
-cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
-things which is not possible directly within the AnyBody Modeling System.
-
-=============
-Installation
-=============
-
-.. toctree::
- :titlesonly:
- :maxdepth: 1
-
- dependencies
- install_guide
-
-=============
-Guides
-=============
-
-The tutorials below are also available as a set of
-`Jupyter Notebooks `_
-
-.. toctree::
- :titlesonly:
- :maxdepth: 1
-
- Tutorial/01_Getting_started_with_anypytools.ipynb
- Tutorial/02_Generating_macros.ipynb
- Tutorial/03_Working_with_output_from_Anybody.ipynb
- Tutorial/04_Batch_processing_multiple_models.ipynb
- Tutorial/05_Monte_Carlo_studies_etc.ipynb
- Tutorial/06_Tips&Tricks.ipynb
-
-==============
-Documentation
-==============
-
-.. toctree::
- :titlesonly:
- :maxdepth: 1
-
- api/index
- pytest_plugin
-
-================
-How to cite?
-================
-
-If you use the library for publications please cite as:
-
-.. rst-class:: without-title
-
-.. seealso::
- Lund et al., (2019). AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System. Journal of Open Source Software, 4(33), 1108, https://doi.org/10.21105/joss.01108
-
-
-============
-Development
-============
-
-I greatly appreciate any contributions to AnyPyTools! If you would like to contribute,
-it is as easy as forking the repository on GitHub, making your changes, and
-issuing a pull request. If you have any questions about this process don't
-hesitate to ask.
-
-See the `Developer's Guide `_ for more information about contributing.
-
-.. toctree::
- :titlesonly:
- :maxdepth: 1
-
- devguide
- changelog
-
-
-=============
-Usefull links
-=============
-
-If you have questions or comments, please contact the author directly, or
-open a `new issue on GitHub `_
-
-* `Jupyter Notebook tutorial `_
-* `Documentation `_
-* `Gitter `_
-* `GitHub Repository `_
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`
-
diff --git a/dev/_sources/install_guide.md.txt b/dev/_sources/install_guide.md.txt
new file mode 100644
index 0000000..678f058
--- /dev/null
+++ b/dev/_sources/install_guide.md.txt
@@ -0,0 +1,39 @@
+# Install guide
+
+## Installation
+
+### The easy way
+
+The easiest way to install AnyPyTools on windows is through the Anaconda Python
+Distribution and the conda package manager.
+
+Install AnyPyTools with the following command:
+
+```bat
+> conda config --add channels conda-forge
+> conda install anypytools
+```
+
+This will install xonsh and all the recommended dependencies. Next, try to launch the
+interactive AnyPyTools notebook tutorial :
+
+```bat
+> AnyPyToolsTutorial.bat
+```
+
+### Install from source
+
+To install xonsh from source on Windows, first install [Python]. Remember to select "Add python to PATH" during installation.
+
+Download the latest [anypytools-master.zip] from github and unzip it
+to `anypytools-master`.
+
+Now install anypytools:
+
+```bat
+> cd anypytools-master
+> pip install -e
+```
+
+[anypytools-master.zip]: https://github.com/anybody-research-group/anypytools/archive/master.zip
+[python]: https://www.python.org/downloads/windows/
diff --git a/dev/_sources/install_guide.rst.txt b/dev/_sources/install_guide.rst.txt
deleted file mode 100644
index 29d5a62..0000000
--- a/dev/_sources/install_guide.rst.txt
+++ /dev/null
@@ -1,49 +0,0 @@
-==========================
-Install guide
-==========================
-
-Installation
-================
-
-The easy way
-----------------
-
-The easiest way to install AnyPyTools on windows is through the Anaconda Python
-Distribution and the conda package manager.
-
-Install AnyPyTools with the following command:
-
-.. code-block:: bat
-
- > conda config --add channels conda-forge
- > conda install anypytools
-
-This will install xonsh and all the recommended dependencies. Next, try to launch the
-interactive AnyPyTools notebook tutorial :
-
-.. code-block:: bat
-
- > AnyPyToolsTutorial.bat
-
-
-Install from source
--------------------
-
-To install xonsh from source on Windows, first install `Python`_. Remember to select "Add python to PATH" during installation.
-
-
-Download the latest `anypytools-master.zip`_ from github and unzip it
-to ``anypytools-master``.
-
-Now install anypytools:
-
-.. code-block:: bat
-
- > cd anypytools-master
- > pip install -e
-
-.. _Python: https://www.python.org/downloads/windows/
-.. _anypytools-master.zip: https://github.com/anybody-research-group/anypytools/archive/master.zip
-
-
-
diff --git a/dev/_sources/pytest_plugin.rst.txt b/dev/_sources/pytest_plugin.md.txt
similarity index 52%
rename from dev/_sources/pytest_plugin.rst.txt
rename to dev/_sources/pytest_plugin.md.txt
index bc089ec..ce83c66 100644
--- a/dev/_sources/pytest_plugin.rst.txt
+++ b/dev/_sources/pytest_plugin.md.txt
@@ -1,14 +1,14 @@
-PyTest plugin.
-================================
+# PyTest plugin.
Pytest is a fantastic test framework for Python code. AnyPyTools provides a
pytest plugin for running and testing AnyBody models. The plugin make pytest
-collect and run AnyScript files with a ``test_`` prefix (e.g.
-``test_mymodel.any``). Once loaded the plugin will attempt to execute a
-``Main.RunTest`` operation if it exists. If the models produce error while
+collect and run AnyScript files with a `test_` prefix (e.g.
+`test_mymodel.any`). Once loaded the plugin will attempt to execute a
+`Main.RunTest` operation if it exists. If the models produce error while
loading and running, the framework considers it a failed test.
+```{eval-rst}
.. automodule:: anypytools.pytest_plugin
:members:
:noindex:
-
+```
diff --git a/dev/_static/documentation_options.js b/dev/_static/documentation_options.js
index 9e4823c..187d0da 100644
--- a/dev/_static/documentation_options.js
+++ b/dev/_static/documentation_options.js
@@ -1,6 +1,6 @@
var DOCUMENTATION_OPTIONS = {
URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
- VERSION: '1.7.1',
+ VERSION: '1.7.2',
LANGUAGE: 'None',
COLLAPSE_INDEX: false,
BUILDER: 'html',
diff --git a/dev/api/AnyMacro.html b/dev/api/AnyMacro.html
index c4d3702..8f617ee 100644
--- a/dev/api/AnyMacro.html
+++ b/dev/api/AnyMacro.html
@@ -7,7 +7,7 @@
- anypytools.AnyMacro — AnyPyTools 1.7.1 documentation
+ anypytools.AnyMacro — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.AnyMacro
@@ -102,7 +103,7 @@
anypytools.datautils¶
Created on Mon Jan 16 11:40:42 2012.
@author: mel
@@ -212,7 +213,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -298,7 +299,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.h5py_wrapper
@@ -307,7 +308,7 @@
diff --git a/api/index.html b/api/index.html
index 9ea6d92..1a40d3e 100644
--- a/api/index.html
+++ b/api/index.html
@@ -7,7 +7,7 @@
- AnyPyTools API — AnyPyTools 1.7.1 documentation
+ AnyPyTools API — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API
@@ -101,7 +102,7 @@ Overview: module code — AnyPyTools 1.7.1 documentation
+ Overview: module code — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Overview: module code
@@ -130,7 +131,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Overview: module code
@@ -138,7 +139,7 @@
diff --git a/dev/_sources/api/AnyMacro.md.txt b/dev/_sources/api/AnyMacro.md.txt
new file mode 100644
index 0000000..27c4cd6
--- /dev/null
+++ b/dev/_sources/api/AnyMacro.md.txt
@@ -0,0 +1,16 @@
+# anypytools.AnyMacro
+
+See {doc}`macro_commands` for a list of classes that generate macro commands.
+
+```{eval-rst}
+.. autoclass:: anypytools.AnyMacro
+ :members:
+ :noindex:
+
+
+
+
+
+
+
+```
diff --git a/dev/_sources/api/AnyMacro.rst.txt b/dev/_sources/api/AnyMacro.rst.txt
deleted file mode 100644
index 50642e8..0000000
--- a/dev/_sources/api/AnyMacro.rst.txt
+++ /dev/null
@@ -1,17 +0,0 @@
-anypytools.AnyMacro
-====================
-
-See :doc:`macro_commands` for a list of classes that generate macro commands.
-
-
-.. autoclass:: anypytools.AnyMacro
- :members:
- :noindex:
-
-
-
-
-
-
-
-
diff --git a/_sources/api/AnyPyProcess.rst.txt b/dev/_sources/api/AnyPyProcess.md.txt
similarity index 54%
rename from _sources/api/AnyPyProcess.rst.txt
rename to dev/_sources/api/AnyPyProcess.md.txt
index 656b372..3e960d1 100644
--- a/_sources/api/AnyPyProcess.rst.txt
+++ b/dev/_sources/api/AnyPyProcess.md.txt
@@ -1,14 +1,12 @@
+# anypytools.AnyPyProcess
-
-anypytools.AnyPyProcess
-~~~~~~~~~~~~~~~~~~~~~~~
-
+```{eval-rst}
.. autoclass:: anypytools.AnyPyProcess
:members:
:noindex:
-
-
-
+
+
+```
diff --git a/_sources/api/abcutils.rst.txt b/dev/_sources/api/abcutils.md.txt
similarity index 61%
rename from _sources/api/abcutils.rst.txt
rename to dev/_sources/api/abcutils.md.txt
index 75a4462..60482e1 100644
--- a/_sources/api/abcutils.rst.txt
+++ b/dev/_sources/api/abcutils.md.txt
@@ -1,9 +1,9 @@
-anypytools.abcutils
-====================
+# anypytools.abcutils
+```{eval-rst}
.. automodule:: anypytools.abcutils
:members:
:undoc-members:
-
+```
diff --git a/dev/_sources/api/anydatah5_generator.md.txt b/dev/_sources/api/anydatah5_generator.md.txt
new file mode 100644
index 0000000..a09ba69
--- /dev/null
+++ b/dev/_sources/api/anydatah5_generator.md.txt
@@ -0,0 +1,6 @@
+# anypytools.datautils.anydatah5_generator
+
+```{eval-rst}
+.. autofunction:: anypytools.datautils.anydatah5_generator
+ :noindex:
+```
diff --git a/dev/_sources/api/anydatah5_generator.rst.txt b/dev/_sources/api/anydatah5_generator.rst.txt
deleted file mode 100644
index 7d7b287..0000000
--- a/dev/_sources/api/anydatah5_generator.rst.txt
+++ /dev/null
@@ -1,6 +0,0 @@
-anypytools.datautils.anydatah5_generator
-========================================
-
-.. autofunction:: anypytools.datautils.anydatah5_generator
- :noindex:
-
diff --git a/dev/_sources/api/anyoutputfile_generator.md.txt b/dev/_sources/api/anyoutputfile_generator.md.txt
new file mode 100644
index 0000000..2578909
--- /dev/null
+++ b/dev/_sources/api/anyoutputfile_generator.md.txt
@@ -0,0 +1,6 @@
+# anypytools.datautils.anyoutputfile_generator
+
+```{eval-rst}
+.. autofunction:: anypytools.datautils.anyoutputfile_generator
+ :noindex:
+```
diff --git a/dev/_sources/api/anyoutputfile_generator.rst.txt b/dev/_sources/api/anyoutputfile_generator.rst.txt
deleted file mode 100644
index b0cfaef..0000000
--- a/dev/_sources/api/anyoutputfile_generator.rst.txt
+++ /dev/null
@@ -1,6 +0,0 @@
-anypytools.datautils.anyoutputfile_generator
-============================================
-
-.. autofunction:: anypytools.datautils.anyoutputfile_generator
- :noindex:
-
diff --git a/_sources/api/datautils.rst.txt b/dev/_sources/api/datautils.md.txt
similarity index 61%
rename from _sources/api/datautils.rst.txt
rename to dev/_sources/api/datautils.md.txt
index c077433..e7a7dc1 100644
--- a/_sources/api/datautils.rst.txt
+++ b/dev/_sources/api/datautils.md.txt
@@ -1,9 +1,9 @@
-anypytools.datautils
-====================
+# anypytools.datautils
+```{eval-rst}
.. automodule:: anypytools.datautils
:members:
:undoc-members:
-
+```
diff --git a/_sources/api/h5py_wrapper.rst.txt b/dev/_sources/api/h5py_wrapper.md.txt
similarity index 54%
rename from _sources/api/h5py_wrapper.rst.txt
rename to dev/_sources/api/h5py_wrapper.md.txt
index ab2a5d6..6682ae0 100644
--- a/_sources/api/h5py_wrapper.rst.txt
+++ b/dev/_sources/api/h5py_wrapper.md.txt
@@ -1,7 +1,7 @@
-anypytools.h5py_wrapper
-==============================
+# anypytools.h5py_wrapper
+```{eval-rst}
.. automodule:: anypytools.h5py_wrapper
:members: File, Group
-
+```
diff --git a/dev/_sources/api/index.md.txt b/dev/_sources/api/index.md.txt
new file mode 100644
index 0000000..5dea572
--- /dev/null
+++ b/dev/_sources/api/index.md.txt
@@ -0,0 +1,53 @@
+(api)=
+
+# AnyPyTools API
+
+## Userfacing API
+
+### Processing
+
+```{toctree}
+:maxdepth: 2
+
+AnyPyProcess
+```
+
+### Generating macros
+
+```{toctree}
+:maxdepth: 2
+
+AnyMacro
+macro_commands
+```
+
+### Reading AnyOutputFiles
+
+```{toctree}
+:maxdepth: 2
+
+read_anyoutputfile
+anyoutputfile_generator
+```
+
+### Reading anydatah5 (hdf5) files
+
+```{toctree}
+:maxdepth: 1
+
+h5py_wrapper
+anydatah5_generator
+```
+
+## All modules
+
+```{toctree}
+:maxdepth: 3
+
+abcutils
+datautils
+macroutils
+h5py_wrapper
+pytest_plugin
+tools
+```
diff --git a/dev/_sources/api/index.rst.txt b/dev/_sources/api/index.rst.txt
deleted file mode 100644
index dfa1bda..0000000
--- a/dev/_sources/api/index.rst.txt
+++ /dev/null
@@ -1,60 +0,0 @@
-.. _api:
-
-=================
-AnyPyTools API
-=================
-
-Userfacing API
---------------
-
-Processing
-~~~~~~~~~~
-
-.. toctree::
- :maxdepth: 2
-
- AnyPyProcess
-
-
-Generating macros
-~~~~~~~~~~~~~~~~~
-
-.. toctree::
- :maxdepth: 2
-
- AnyMacro
- macro_commands
-
-
-Reading AnyOutputFiles
-~~~~~~~~~~~~~~~~~~~~~~
-
-.. toctree::
- :maxdepth: 2
-
- read_anyoutputfile
- anyoutputfile_generator
-
-Reading anydatah5 (hdf5) files
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-.. toctree::
- :maxdepth: 1
-
- h5py_wrapper
- anydatah5_generator
-
-
-All modules
-------------------
-
-.. toctree::
- :maxdepth: 3
-
- abcutils
- datautils
- macroutils
- h5py_wrapper
- pytest_plugin
- tools
-
diff --git a/dev/_sources/api/macro_commands.rst.txt b/dev/_sources/api/macro_commands.md.txt
similarity index 60%
rename from dev/_sources/api/macro_commands.rst.txt
rename to dev/_sources/api/macro_commands.md.txt
index 67a7f8c..b060988 100644
--- a/dev/_sources/api/macro_commands.rst.txt
+++ b/dev/_sources/api/macro_commands.md.txt
@@ -1,8 +1,8 @@
-anypytools.macro_commands
-================================
+# anypytools.macro_commands
+```{eval-rst}
.. automodule:: anypytools.macro_commands
:members:
:undoc-members:
:noindex:
-
+```
diff --git a/dev/_sources/api/macroutils.rst.txt b/dev/_sources/api/macroutils.md.txt
similarity index 60%
rename from dev/_sources/api/macroutils.rst.txt
rename to dev/_sources/api/macroutils.md.txt
index f49af5f..ee4451c 100644
--- a/dev/_sources/api/macroutils.rst.txt
+++ b/dev/_sources/api/macroutils.md.txt
@@ -1,9 +1,9 @@
-anypytools.macroutils
-=====================
+# anypytools.macroutils
+```{eval-rst}
.. automodule:: anypytools.macroutils
:members:
:undoc-members:
-
+```
diff --git a/dev/_sources/api/pytest_plugin.rst.txt b/dev/_sources/api/pytest_plugin.md.txt
similarity index 58%
rename from dev/_sources/api/pytest_plugin.rst.txt
rename to dev/_sources/api/pytest_plugin.md.txt
index af2e454..7a7a07f 100644
--- a/dev/_sources/api/pytest_plugin.rst.txt
+++ b/dev/_sources/api/pytest_plugin.md.txt
@@ -1,8 +1,8 @@
-anypytools.pytest_plugin
-========================
+# anypytools.pytest_plugin
+```{eval-rst}
.. automodule:: anypytools.pytest_plugin
:members:
:undoc-members:
-
+```
diff --git a/dev/_sources/api/read_anyoutputfile.md.txt b/dev/_sources/api/read_anyoutputfile.md.txt
new file mode 100644
index 0000000..2620e6e
--- /dev/null
+++ b/dev/_sources/api/read_anyoutputfile.md.txt
@@ -0,0 +1,6 @@
+# anypytools.datautils.read_anyoutputfile
+
+```{eval-rst}
+.. autofunction:: anypytools.datautils.read_anyoutputfile
+ :noindex:
+```
diff --git a/dev/_sources/api/read_anyoutputfile.rst.txt b/dev/_sources/api/read_anyoutputfile.rst.txt
deleted file mode 100644
index fbce15a..0000000
--- a/dev/_sources/api/read_anyoutputfile.rst.txt
+++ /dev/null
@@ -1,6 +0,0 @@
-anypytools.datautils.read_anyoutputfile
-=======================================
-
-.. autofunction:: anypytools.datautils.read_anyoutputfile
- :noindex:
-
diff --git a/_sources/api/tools.rst.txt b/dev/_sources/api/tools.md.txt
similarity index 52%
rename from _sources/api/tools.rst.txt
rename to dev/_sources/api/tools.md.txt
index 965b1c9..ea31abd 100644
--- a/_sources/api/tools.rst.txt
+++ b/dev/_sources/api/tools.md.txt
@@ -1,6 +1,6 @@
-anypytools.tools
-====================
+# anypytools.tools
+```{eval-rst}
.. automodule:: anypytools.tools
:members:
-
+```
diff --git a/dev/_sources/changelog.md.txt b/dev/_sources/changelog.md.txt
new file mode 100644
index 0000000..f1d6bec
--- /dev/null
+++ b/dev/_sources/changelog.md.txt
@@ -0,0 +1,5 @@
+
+(changelog)=
+
+```{include} ../CHANGELOG.md
+```
diff --git a/dev/_sources/changelog.rst.txt b/dev/_sources/changelog.rst.txt
deleted file mode 100644
index 4d7817a..0000000
--- a/dev/_sources/changelog.rst.txt
+++ /dev/null
@@ -1 +0,0 @@
-.. include:: ../CHANGELOG.rst
\ No newline at end of file
diff --git a/dev/_sources/dependencies.md.txt b/dev/_sources/dependencies.md.txt
new file mode 100644
index 0000000..ba779b7
--- /dev/null
+++ b/dev/_sources/dependencies.md.txt
@@ -0,0 +1,15 @@
+# Dependencies
+
+AnyPyTools currently has the following external dependencies,
+
+*Run Time:*
+
+> - [Python v3.6+](https://www.python.org/)
+> - [Numpy](http://www.numpy.org/)
+> - [SciPy\*](https://www.scipy.org/)
+> - [PyDOE\*](https://pythonhosted.org/pyDOE/)
+> - [h5py\*](http://www.h5py.org/)
+
+:::{note}
+Packages markerd with (\*) are partly optional and only used in specific parts of the library.
+:::
diff --git a/dev/_sources/dependencies.rst.txt b/dev/_sources/dependencies.rst.txt
deleted file mode 100644
index d7367a4..0000000
--- a/dev/_sources/dependencies.rst.txt
+++ /dev/null
@@ -1,17 +0,0 @@
-Dependencies
-============
-AnyPyTools currently has the following external dependencies,
-
-*Run Time:*
-
- - `Python v3.6+ anypytools.h5py_wrapper¶
Created on Mon Jan 16 11:40:42 2012.
@author: mel
@@ -243,7 +244,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -250,7 +251,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API
@@ -258,7 +259,7 @@
diff --git a/api/macro_commands.html b/api/macro_commands.html
index d749b96..80cef99 100644
--- a/api/macro_commands.html
+++ b/api/macro_commands.html
@@ -7,7 +7,7 @@
- anypytools.macro_commands — AnyPyTools 1.7.1 documentation
+ anypytools.macro_commands — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macro_commands
@@ -102,7 +103,7 @@ anypytools.macroutils — AnyPyTools 1.7.1 documentation
+ anypytools.macroutils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.macroutils
@@ -1049,7 +1050,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.macroutils
@@ -1058,7 +1059,7 @@
diff --git a/dev/_modules/anypytools/pytest_plugin.html b/dev/_modules/anypytools/pytest_plugin.html
index 2e16a6f..9550fb1 100644
--- a/dev/_modules/anypytools/pytest_plugin.html
+++ b/dev/_modules/anypytools/pytest_plugin.html
@@ -7,7 +7,7 @@
- anypytools.pytest_plugin — AnyPyTools 1.7.1 documentation
+ anypytools.pytest_plugin — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.pytest_plugin
@@ -92,7 +93,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.pytest_plugin
@@ -680,7 +681,7 @@
diff --git a/dev/_modules/anypytools/tools.html b/dev/_modules/anypytools/tools.html
index d9ecd21..f60ce5b 100644
--- a/dev/_modules/anypytools/tools.html
+++ b/dev/_modules/anypytools/tools.html
@@ -7,7 +7,7 @@
- anypytools.tools — AnyPyTools 1.7.1 documentation
+ anypytools.tools — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.tools
@@ -1135,7 +1136,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.tools
@@ -1144,7 +1145,7 @@
diff --git a/dev/_modules/index.html b/dev/_modules/index.html
index c14fdbf..92c8651 100644
--- a/dev/_modules/index.html
+++ b/dev/_modules/index.html
@@ -7,7 +7,7 @@
- AnyPyTools API¶
Userfacing API¶
@@ -195,7 +196,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -762,7 +763,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macro_commands
@@ -771,7 +772,7 @@
diff --git a/api/macroutils.html b/api/macroutils.html
index 1a43ada..b157e7d 100644
--- a/api/macroutils.html
+++ b/api/macroutils.html
@@ -7,7 +7,7 @@
- anypytools.macroutils — AnyPyTools 1.7.1 documentation
+ anypytools.macroutils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macroutils
@@ -102,7 +103,7 @@ anypytools.h5py_wrapper — AnyPyTools 1.7.1 documentation
+ anypytools.h5py_wrapper — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.h5py_wrapper
@@ -289,7 +290,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.h5py_wrapper
@@ -298,7 +299,7 @@
diff --git a/dev/_modules/anypytools/macroutils.html b/dev/_modules/anypytools/macroutils.html
index d6b7d7b..7a83556 100644
--- a/dev/_modules/anypytools/macroutils.html
+++ b/dev/_modules/anypytools/macroutils.html
@@ -7,7 +7,7 @@
- anypytools.macro_commands¶
Created on Wed Apr 29 08:21:46 2015.
@author: mel
@@ -707,7 +708,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -762,7 +763,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macroutils
@@ -771,7 +772,7 @@
diff --git a/api/pytest_plugin.html b/api/pytest_plugin.html
index aaa0a7e..65da054 100644
--- a/api/pytest_plugin.html
+++ b/api/pytest_plugin.html
@@ -7,7 +7,7 @@
- anypytools.pytest_plugin — AnyPyTools 1.7.1 documentation
+ anypytools.pytest_plugin — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.pytest_plugin
@@ -102,7 +103,7 @@ anypytools.abcutils — AnyPyTools 1.7.1 documentation
+ anypytools.abcutils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.abcutils
@@ -819,6 +820,10 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.abcutils
@@ -1057,7 +1062,7 @@
diff --git a/dev/_modules/anypytools/datautils.html b/dev/_modules/anypytools/datautils.html
index 1824988..8c282f2 100644
--- a/dev/_modules/anypytools/datautils.html
+++ b/dev/_modules/anypytools/datautils.html
@@ -7,7 +7,7 @@
- anypytools.datautils — AnyPyTools 1.7.1 documentation
+ anypytools.datautils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.datautils
@@ -331,7 +332,7 @@
toc
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Module code »
anypytools.datautils
@@ -340,7 +341,7 @@
diff --git a/dev/_modules/anypytools/h5py_wrapper.html b/dev/_modules/anypytools/h5py_wrapper.html
index 87a2f96..ba3f085 100644
--- a/dev/_modules/anypytools/h5py_wrapper.html
+++ b/dev/_modules/anypytools/h5py_wrapper.html
@@ -7,7 +7,7 @@
- anypytools.macroutils¶
Created on Mon Mar 23 21:14:59 2015.
@author: Morten
@@ -707,7 +708,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -356,7 +357,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.pytest_plugin
@@ -365,7 +366,7 @@
diff --git a/api/read_anyoutputfile.html b/api/read_anyoutputfile.html
index 5464669..c2913cf 100644
--- a/api/read_anyoutputfile.html
+++ b/api/read_anyoutputfile.html
@@ -7,7 +7,7 @@
- anypytools.datautils.read_anyoutputfile — AnyPyTools 1.7.1 documentation
+ anypytools.datautils.read_anyoutputfile — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils.read_anyoutputfile
@@ -102,7 +103,7 @@ Tips & Trics for anypytools — AnyPyTools 1.7.1 documentation
+ Tips & Trics for anypytools — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -64,7 +65,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Tips & Trics for anypytools
@@ -824,7 +825,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Tips & Trics for anypytools
@@ -832,7 +833,7 @@
diff --git a/dev/_modules/anypytools/abcutils.html b/dev/_modules/anypytools/abcutils.html
index e73c9f7..59b354e 100644
--- a/dev/_modules/anypytools/abcutils.html
+++ b/dev/_modules/anypytools/abcutils.html
@@ -7,7 +7,7 @@
- anypytools.pytest_plugin¶
Created on Mon Sep 1 12:44:36 2014.
@author: Morten
@@ -301,7 +302,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
diff --git a/api/tools.html b/api/tools.html
index fa64688..8d807af 100644
--- a/api/tools.html
+++ b/api/tools.html
@@ -7,7 +7,7 @@
- anypytools.tools — AnyPyTools 1.7.1 documentation
+ anypytools.tools — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.tools
@@ -102,7 +103,7 @@ Advanced Examples — AnyPyTools 1.7.1 documentation
+ Advanced Examples — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -64,7 +65,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Advanced Examples
@@ -808,7 +809,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Advanced Examples
@@ -816,7 +817,7 @@
diff --git a/dev/Tutorial/06_Tips&Tricks.html b/dev/Tutorial/06_Tips&Tricks.html
index 06132d1..290d91d 100644
--- a/dev/Tutorial/06_Tips&Tricks.html
+++ b/dev/Tutorial/06_Tips&Tricks.html
@@ -7,7 +7,7 @@
- anypytools.datautils.read_anyoutputfile¶
-
@@ -148,7 +149,7 @@
Next page
@@ -203,7 +204,7 @@This Page
Navigation
- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -212,7 +213,7 @@Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -401,7 +402,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.tools
@@ -410,7 +411,7 @@
diff --git a/changelog.html b/changelog.html
index 2070779..c753c16 100644
--- a/changelog.html
+++ b/changelog.html
@@ -7,7 +7,7 @@
- AnyPyTools Change Log — AnyPyTools 1.7.1 documentation
+ AnyPyTools Change Log — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools Change Log
@@ -97,8 +98,17 @@ Batch processing — AnyPyTools 1.7.1 documentation
+ Batch processing — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -64,7 +65,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Batch processing
@@ -535,7 +536,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Batch processing
@@ -543,7 +544,7 @@
diff --git a/dev/Tutorial/05_Monte_Carlo_studies_etc.html b/dev/Tutorial/05_Monte_Carlo_studies_etc.html
index cfcc559..61afb22 100644
--- a/dev/Tutorial/05_Monte_Carlo_studies_etc.html
+++ b/dev/Tutorial/05_Monte_Carlo_studies_etc.html
@@ -7,7 +7,7 @@
- anypytools.tools¶
Created on Sun Sep 7 13:25:38 2014.
@author: Morten
@@ -346,7 +347,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
-Working with data from AnyBody — AnyPyTools 1.7.1 documentation
+ Working with data from AnyBody — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -64,7 +65,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Working with data from AnyBody
@@ -851,7 +852,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Working with data from AnyBody
@@ -859,7 +860,7 @@
diff --git a/dev/Tutorial/04_Batch_processing_multiple_models.html b/dev/Tutorial/04_Batch_processing_multiple_models.html
index 969f187..354b454 100644
--- a/dev/Tutorial/04_Batch_processing_multiple_models.html
+++ b/dev/Tutorial/04_Batch_processing_multiple_models.html
@@ -7,7 +7,7 @@
- AnyPyTools Change Log¶
+
+
diff --git a/dependencies.html b/dependencies.html
index 6e59321..a4f35e2 100644
--- a/dependencies.html
+++ b/dependencies.html
@@ -7,7 +7,7 @@
- Dependencies — AnyPyTools 1.7.1 documentation
+ Dependencies — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Dependencies
@@ -101,7 +102,7 @@ Creating AnyScript Macros — AnyPyTools 1.7.1 documentation
+ Creating AnyScript Macros — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -64,7 +65,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Creating AnyScript Macros
@@ -758,7 +759,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Creating AnyScript Macros
@@ -766,7 +767,7 @@
diff --git a/dev/Tutorial/03_Working_with_output_from_Anybody.html b/dev/Tutorial/03_Working_with_output_from_Anybody.html
index 2aa7e7f..8a611ab 100644
--- a/dev/Tutorial/03_Working_with_output_from_Anybody.html
+++ b/dev/Tutorial/03_Working_with_output_from_Anybody.html
@@ -7,7 +7,7 @@
- AnyPyTools Change Log¶
+
+
v1.7.2¶
+Changed:
+-
+
Update documentation to use markdown.
+Add error message when no files are found with +
search_subdirarguments (fixes #69).
+
v1.7.1¶
Fixed:
@@ -117,7 +127,7 @@v1.7.0¶
Changed:
-
-
The to_dataframe() methods have been updated. +
The
to_dataframe()methods have been updated. They now return a dataframe without an index by default.They also now support interpolation of the data.
@@ -620,6 +630,7 @@app = AnyPyProcess() @@ -133,7 +143,7 @@
v1.6.0 -
Documentation on how to use the to_dataframe() method has been added to the tutorials.
Documentation on how to use the
to_dataframe()method has been added to the tutorials.@@ -146,7 +156,7 @@@@ -198,7 +208,7 @@v1.5.0index_var must be present in all simulations. Also note that since pandas dataframes are 2D any 3D data will be flattened. For example 3D vectors which will be saved into three columns in the dataframe. E.g.
r[0],r[1],r[2].v1.4.0task_logfile,
task_macroetc.) are now hidden by default in the -when printing the object witht the default __repr__() +when printing the object witht the default__repr__()The
return_task_infoargument toAnyPyProcessclass is now deprecated and task information is always include in the output.v1.2.0 -
Pytest plugin: Deprecated the
warnings_to_includevariable. Instead use the fatal_warnings +Pytest plugin: Deprecated the
warnings_to_includevariable. Instead use thefatal_warningsvariable to select specific warnings.<v0.8Page contents
- AnyPyTools Change Log
-
+
- v1.7.2
- v1.7.1
- v1.7.0
- v1.6.0 @@ -687,7 +698,7 @@
- previous -
- AnyPyTools 1.7.1 documentation » +
- AnyPyTools 1.7.2 documentation »
Previous page
@@ -739,7 +750,7 @@This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
+
@@ -198,7 +199,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Dependencies
@@ -206,7 +207,7 @@
diff --git a/dev/.buildinfo b/dev/.buildinfo
index 5a5d8de..ce7bd7e 100644
--- a/dev/.buildinfo
+++ b/dev/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: b7d8bdc516606dcd49bb3850118ae3aa
+config: 3b4154cdc7ce060e193d2e081825fef7
tags: 215a160b05421de5bc211dbc6f8d89fe
diff --git a/dev/Tutorial/01_Getting_started_with_anypytools.html b/dev/Tutorial/01_Getting_started_with_anypytools.html
index 4c25b14..ec2d111 100644
--- a/dev/Tutorial/01_Getting_started_with_anypytools.html
+++ b/dev/Tutorial/01_Getting_started_with_anypytools.html
@@ -7,7 +7,7 @@
- Getting Started with AnyPyTools — AnyPyTools 1.7.1 documentation
+ Getting Started with AnyPyTools — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -64,7 +65,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Getting Started with AnyPyTools
@@ -674,7 +675,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Getting Started with AnyPyTools
@@ -682,7 +683,7 @@
diff --git a/dev/Tutorial/02_Generating_macros.html b/dev/Tutorial/02_Generating_macros.html
index 8b5eacf..e2d6ecf 100644
--- a/dev/Tutorial/02_Generating_macros.html
+++ b/dev/Tutorial/02_Generating_macros.html
@@ -7,7 +7,7 @@
- Dependencies¶
AnyPyTools currently has the following external dependencies,
Run Time:
@@ -143,7 +144,7 @@Next page
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Source code for anypytools.abcutils
# Extend the folderlist if search_subdir is given
if isinstance(search_subdirs, str) and isinstance(folderlist[0], str):
folderlist = sum([getsubdirs(d, search_subdirs) for d in folderlist], [])
+ if len(folderlist) == 0:
+ raise ValueError(
+ f"No subdirectories found, which match the file:{search_subdirs}"
+ )
# Check for explicit logfile
if not isinstance(logfile, (type(None), str, os.PathLike)):
raise ValueError("logfile must be a str or path")
@@ -1048,7 +1053,7 @@ Navigation
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Source code for anypytools.pytest_plugin
import pytest
-from _pytest.tmpdir import TempdirFactory, TempPathFactory
+from pytest import TempdirFactory, TempPathFactory
from anypytools import AnyPyProcess, macro_commands
from anypytools.tools import (
@@ -671,7 +672,7 @@ Navigation
Navigation
Navigation
Navigation
Navigation
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+
+Don't panic
+:::
+
+Its main purpose is to launch AnyBody simulations and collect results. It has a
+scheduler to launch multiple instances of AMS utilising computers with multiple
+cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
+things which is not possible directly within the AnyBody Modeling System.
+
+## Installation
+
+```{toctree}
+:maxdepth: 1
+:titlesonly: true
+
+dependencies
+install_guide
+```
+
+## Guides
+
+The tutorials below are also available as a set of
+[Jupyter Notebooks](http://nbviewer.jupyter.org/github/AnyBody-Research-Group/AnyPyTools/blob/master/docs/Tutorial/00_AnyPyTools_tutorial.ipynb)
+
+```{toctree}
+:maxdepth: 1
+:titlesonly: true
+
+Tutorial/01_Getting_started_with_anypytools.ipynb
+Tutorial/02_Generating_macros.ipynb
+Tutorial/03_Working_with_output_from_Anybody.ipynb
+Tutorial/04_Batch_processing_multiple_models.ipynb
+Tutorial/05_Monte_Carlo_studies_etc.ipynb
+Tutorial/06_Tips&Tricks.ipynb
+```
+
+## Documentation
+
+```{toctree}
+:maxdepth: 1
+:titlesonly: true
+
+api/index
+pytest_plugin
+```
+
+## How to cite?
+
+If you use the library for publications please cite as:
+
+```{rst-class} without-title
+```
+
+:::{seealso}
+Lund et al., (2019). AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System. Journal of Open Source Software, 4(33), 1108, Navigation
Navigation
padding-left: .2em; } -
+
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.AnyMacro
@@ -418,7 +419,7 @@
diff --git a/dev/api/AnyPyProcess.html b/dev/api/AnyPyProcess.html
index f9f4937..bf2c6a6 100644
--- a/dev/api/AnyPyProcess.html
+++ b/dev/api/AnyPyProcess.html
@@ -7,7 +7,7 @@
- anypytools.AnyPyProcess — AnyPyTools 1.7.1 documentation
+ anypytools.AnyPyProcess — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.AnyPyProcess
@@ -102,7 +103,7 @@
anypytools.AnyMacro¶
See anypytools.macro_commands for a list of classes that generate macro commands.
-
@@ -354,7 +355,7 @@
Next page
This Page
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padding-left: .2em; } -
+
diff --git a/dev/api/abcutils.html b/dev/api/abcutils.html
index 0101e92..fd60d5e 100644
--- a/dev/api/abcutils.html
+++ b/dev/api/abcutils.html
@@ -7,7 +7,7 @@
- anypytools.abcutils — AnyPyTools 1.7.1 documentation
+ anypytools.abcutils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.abcutils
@@ -102,7 +103,7 @@
anypytools.AnyPyProcess¶
-
@@ -326,7 +327,7 @@
Next page
@@ -381,7 +382,7 @@This Page
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- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -390,7 +391,7 @@Navigation
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padding-left: .2em; } -
+
@@ -437,7 +438,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.abcutils
@@ -446,7 +447,7 @@
diff --git a/dev/api/anydatah5_generator.html b/dev/api/anydatah5_generator.html
index 337b99d..17281ab 100644
--- a/dev/api/anydatah5_generator.html
+++ b/dev/api/anydatah5_generator.html
@@ -7,7 +7,7 @@
- anypytools.datautils.anydatah5_generator — AnyPyTools 1.7.1 documentation
+ anypytools.datautils.anydatah5_generator — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils.anydatah5_generator
@@ -102,7 +103,7 @@
anypytools.abcutils¶
Created on Fri Oct 19 21:14:59 2012 @author: Morten
@@ -382,7 +383,7 @@Next page
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padding-left: .2em; } -
+
diff --git a/dev/api/anyoutputfile_generator.html b/dev/api/anyoutputfile_generator.html
index 28d342c..909f511 100644
--- a/dev/api/anyoutputfile_generator.html
+++ b/dev/api/anyoutputfile_generator.html
@@ -7,7 +7,7 @@
- anypytools.datautils.anyoutputfile_generator — AnyPyTools 1.7.1 documentation
+ anypytools.datautils.anyoutputfile_generator — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils.anyoutputfile_generator
@@ -102,7 +103,7 @@
anypytools.datautils.anydatah5_generator¶
-
@@ -158,7 +159,7 @@
Next page
@@ -213,7 +214,7 @@This Page
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- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -222,7 +223,7 @@Navigation
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padding-left: .2em; } -
+
diff --git a/dev/api/datautils.html b/dev/api/datautils.html
index fdca962..b315e99 100644
--- a/dev/api/datautils.html
+++ b/dev/api/datautils.html
@@ -7,7 +7,7 @@
- anypytools.datautils — AnyPyTools 1.7.1 documentation
+ anypytools.datautils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils
@@ -102,7 +103,7 @@
anypytools.datautils.anyoutputfile_generator¶
-
@@ -162,7 +163,7 @@
Next page
@@ -217,7 +218,7 @@This Page
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- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -226,7 +227,7 @@Navigation
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padding-left: .2em; } -
+
@@ -267,7 +268,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils
@@ -276,7 +277,7 @@
diff --git a/dev/api/h5py_wrapper.html b/dev/api/h5py_wrapper.html
index f8d0f41..43a6686 100644
--- a/dev/api/h5py_wrapper.html
+++ b/dev/api/h5py_wrapper.html
@@ -7,7 +7,7 @@
- anypytools.h5py_wrapper — AnyPyTools 1.7.1 documentation
+ anypytools.h5py_wrapper — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.h5py_wrapper
@@ -102,7 +103,7 @@
anypytools.datautils¶
Created on Mon Jan 16 11:40:42 2012.
@author: mel
@@ -212,7 +213,7 @@Next page
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+
@@ -298,7 +299,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
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@@ -307,7 +308,7 @@
diff --git a/dev/api/index.html b/dev/api/index.html
index 9ea6d92..1a40d3e 100644
--- a/dev/api/index.html
+++ b/dev/api/index.html
@@ -7,7 +7,7 @@
- AnyPyTools API — AnyPyTools 1.7.1 documentation
+ AnyPyTools API — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API
@@ -101,7 +102,7 @@
anypytools.h5py_wrapper¶
Created on Mon Jan 16 11:40:42 2012.
@author: mel
@@ -243,7 +244,7 @@Next page
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+
@@ -250,7 +251,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API
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diff --git a/dev/api/macro_commands.html b/dev/api/macro_commands.html
index d749b96..80cef99 100644
--- a/dev/api/macro_commands.html
+++ b/dev/api/macro_commands.html
@@ -7,7 +7,7 @@
- anypytools.macro_commands — AnyPyTools 1.7.1 documentation
+ anypytools.macro_commands — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macro_commands
@@ -102,7 +103,7 @@
AnyPyTools API¶
Userfacing API¶
@@ -195,7 +196,7 @@Next page
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+
@@ -762,7 +763,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macro_commands
@@ -771,7 +772,7 @@
diff --git a/dev/api/macroutils.html b/dev/api/macroutils.html
index 1a43ada..b157e7d 100644
--- a/dev/api/macroutils.html
+++ b/dev/api/macroutils.html
@@ -7,7 +7,7 @@
- anypytools.macroutils — AnyPyTools 1.7.1 documentation
+ anypytools.macroutils — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macroutils
@@ -102,7 +103,7 @@
anypytools.macro_commands¶
Created on Wed Apr 29 08:21:46 2015.
@author: mel
@@ -707,7 +708,7 @@Next page
This Page
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padding-left: .2em; } -
+
@@ -762,7 +763,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.macroutils
@@ -771,7 +772,7 @@
diff --git a/dev/api/pytest_plugin.html b/dev/api/pytest_plugin.html
index aaa0a7e..65da054 100644
--- a/dev/api/pytest_plugin.html
+++ b/dev/api/pytest_plugin.html
@@ -7,7 +7,7 @@
- anypytools.pytest_plugin — AnyPyTools 1.7.1 documentation
+ anypytools.pytest_plugin — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.pytest_plugin
@@ -102,7 +103,7 @@
anypytools.macroutils¶
Created on Mon Mar 23 21:14:59 2015.
@author: Morten
@@ -707,7 +708,7 @@Next page
This Page
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padding-left: .2em; } -
+
@@ -356,7 +357,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.pytest_plugin
@@ -365,7 +366,7 @@
diff --git a/dev/api/read_anyoutputfile.html b/dev/api/read_anyoutputfile.html
index 5464669..c2913cf 100644
--- a/dev/api/read_anyoutputfile.html
+++ b/dev/api/read_anyoutputfile.html
@@ -7,7 +7,7 @@
- anypytools.datautils.read_anyoutputfile — AnyPyTools 1.7.1 documentation
+ anypytools.datautils.read_anyoutputfile — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.datautils.read_anyoutputfile
@@ -102,7 +103,7 @@
anypytools.pytest_plugin¶
Created on Mon Sep 1 12:44:36 2014.
@author: Morten
@@ -301,7 +302,7 @@Next page
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padding-left: .2em; } -
+
diff --git a/dev/api/tools.html b/dev/api/tools.html
index fa64688..8d807af 100644
--- a/dev/api/tools.html
+++ b/dev/api/tools.html
@@ -7,7 +7,7 @@
- anypytools.tools — AnyPyTools 1.7.1 documentation
+ anypytools.tools — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.tools
@@ -102,7 +103,7 @@
anypytools.datautils.read_anyoutputfile¶
-
@@ -148,7 +149,7 @@
Next page
@@ -203,7 +204,7 @@This Page
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- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -212,7 +213,7 @@Navigation
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+
@@ -401,7 +402,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools API »
anypytools.tools
@@ -410,7 +411,7 @@
diff --git a/dev/changelog.html b/dev/changelog.html
index 2070779..c753c16 100644
--- a/dev/changelog.html
+++ b/dev/changelog.html
@@ -7,7 +7,7 @@
- AnyPyTools Change Log — AnyPyTools 1.7.1 documentation
+ AnyPyTools Change Log — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
AnyPyTools Change Log
@@ -97,8 +98,17 @@
anypytools.tools¶
Created on Sun Sep 7 13:25:38 2014.
@author: Morten
@@ -346,7 +347,7 @@Next page
This Page
Navigation
Navigation
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padding-left: .2em; } -
-
AnyPyTools Change Log¶
+
+
diff --git a/dev/dependencies.html b/dev/dependencies.html
index 6e59321..a4f35e2 100644
--- a/dev/dependencies.html
+++ b/dev/dependencies.html
@@ -7,7 +7,7 @@
- Dependencies — AnyPyTools 1.7.1 documentation
+ Dependencies — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Dependencies
@@ -101,7 +102,7 @@
AnyPyTools Change Log¶
+
+
v1.7.2¶
+Changed:
+-
+
Update documentation to use markdown.
+Add error message when no files are found with +
search_subdirarguments (fixes #69).
+
v1.7.1¶
Fixed:
@@ -117,7 +127,7 @@v1.7.0¶
Changed:
-
-
The to_dataframe() methods have been updated. +
The
to_dataframe()methods have been updated. They now return a dataframe without an index by default.They also now support interpolation of the data.
@@ -620,6 +630,7 @@app = AnyPyProcess() @@ -133,7 +143,7 @@
v1.6.0 -
Documentation on how to use the to_dataframe() method has been added to the tutorials.
Documentation on how to use the
to_dataframe()method has been added to the tutorials.@@ -146,7 +156,7 @@@@ -198,7 +208,7 @@v1.5.0index_var must be present in all simulations. Also note that since pandas dataframes are 2D any 3D data will be flattened. For example 3D vectors which will be saved into three columns in the dataframe. E.g.
r[0],r[1],r[2].v1.4.0task_logfile,
task_macroetc.) are now hidden by default in the -when printing the object witht the default __repr__() +when printing the object witht the default__repr__()The
return_task_infoargument toAnyPyProcessclass is now deprecated and task information is always include in the output.v1.2.0 -
Pytest plugin: Deprecated the
warnings_to_includevariable. Instead use the fatal_warnings +Pytest plugin: Deprecated the
warnings_to_includevariable. Instead use thefatal_warningsvariable to select specific warnings.<v0.8Page contents
- AnyPyTools Change Log
-
+
- v1.7.2
- v1.7.1
- v1.7.0
- v1.6.0 @@ -687,7 +698,7 @@
- previous -
- AnyPyTools 1.7.1 documentation » +
- AnyPyTools 1.7.2 documentation »
Previous page
@@ -739,7 +750,7 @@This Page
Navigation
Navigation
Navigation
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padding-left: .2em; } -
+
@@ -198,7 +199,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Dependencies
@@ -206,7 +207,7 @@
diff --git a/dev/devguide.html b/dev/devguide.html
index 61af5e1..dc1fc67 100644
--- a/dev/devguide.html
+++ b/dev/devguide.html
@@ -7,7 +7,7 @@
- Developer’s Guide — AnyPyTools 1.7.1 documentation
+ Developer’s Guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
previous
- AnyPyTools 1.7.1 documentation »
+ AnyPyTools 1.7.2 documentation »
Developer’s Guide
@@ -101,9 +102,12 @@
Dependencies¶
AnyPyTools currently has the following external dependencies,
Run Time:
@@ -143,7 +144,7 @@Next page
This Page
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
-
+
Developer’s Guide¶
-
+
+Python Hooks
Developer’s Guide¶
+
+
+
+Don’t panic¶
+This is place for developer information that does not belong in the user guides or the API reference, but is useful for people developing or contributing to AnyPyTools.
@@ -203,7 +207,7 @@Python Hooks
Building the Website¶
Building the website/documentation requires the following dependencies:
-
+
Maintenance Tasks
Performing the Release¶
-
+
Update and push the release log
Update version number in anypytools.__init__.py
Ensure test pass
Make PR on GitHub, and check docs compile correctly on Github Actions
Create a tag with the version number and push it.
-- Crate PYPI pckage
+
+- Crate PYPI pckage
Run python setup.py sdist
Run twine upload dist/*
@@ -337,7 +341,7 @@ Next page
This Page
@@ -392,7 +396,7 @@ Navigation
-
previous
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -400,7 +404,7 @@ Navigation
diff --git a/dev/genindex.html b/dev/genindex.html
index 51ca048..862540f 100644
--- a/dev/genindex.html
+++ b/dev/genindex.html
@@ -7,7 +7,7 @@
- Index — AnyPyTools 1.7.1 documentation
+ Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -539,7 +540,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -547,7 +548,7 @@ Navigation
diff --git a/dev/index.html b/dev/index.html
index 53490c3..b904891 100644
--- a/dev/index.html
+++ b/dev/index.html
@@ -7,7 +7,7 @@
- AnyPyTools’ documentation! — AnyPyTools 1.7.1 documentation
+ AnyPyTools’ documentation! — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@ Navigation
-
next
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -97,11 +98,14 @@ Navigation
padding-left: .2em;
}
-
+
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from
Python.
-
+
+
+Don’t panic¶
+
Its main purpose is to launch AnyBody simulations and collect results. It has a
scheduler to launch multiple instances of AMS utilising computers with multiple
cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
@@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing.
+
See the Developer’s Guide for more information about contributing.
- Developer’s Guide
@@ -166,8 +170,8 @@ Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
-
next
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -269,7 +273,7 @@ Navigation
diff --git a/dev/install_guide.html b/dev/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/dev/install_guide.html
+++ b/dev/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
-
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- - AnyPyTools 1.7.1 documentation »
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Install guide¶
Installation¶
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diff --git a/dev/objects.inv b/dev/objects.inv
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- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
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diff --git a/dev/pytest_plugin.html b/dev/pytest_plugin.html
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--- a/dev/pytest_plugin.html
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- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
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PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a
pytest plugin for running and testing AnyBody models. The plugin make pytest
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diff --git a/dev/search.html b/dev/search.html
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- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
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diff --git a/dev/searchindex.js b/dev/searchindex.js
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diff --git a/devguide.html b/devguide.html
index 61af5e1..dc1fc67 100644
--- a/devguide.html
+++ b/devguide.html
@@ -7,7 +7,7 @@
- Developer’s Guide — AnyPyTools 1.7.1 documentation
+ Developer’s Guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
-
previous
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -101,9 +102,12 @@ Navigation
padding-left: .2em;
}
-
-Developer’s Guide¶
-
+
+Developer’s Guide¶
+
+
+Don’t panic¶
+
This is place for developer information that does not belong in the user
guides or the API reference, but is useful for people developing or contributing
to AnyPyTools.
@@ -203,7 +207,7 @@ Python Hooks
Building the Website¶
Building the website/documentation requires the following dependencies:
-
+
Maintenance Tasks
Performing the Release¶
-
+
Update and push the release log
Update version number in anypytools.__init__.py
Ensure test pass
Make PR on GitHub, and check docs compile correctly on Github Actions
Create a tag with the version number and push it.
-- Crate PYPI pckage
+
+- Crate PYPI pckage
Run python setup.py sdist
Run twine upload dist/*
@@ -337,7 +341,7 @@ Next page
This Page
@@ -392,7 +396,7 @@ Navigation
-
previous
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -400,7 +404,7 @@ Navigation
diff --git a/genindex.html b/genindex.html
index 51ca048..862540f 100644
--- a/genindex.html
+++ b/genindex.html
@@ -7,7 +7,7 @@
- Index — AnyPyTools 1.7.1 documentation
+ Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -539,7 +540,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -547,7 +548,7 @@ Navigation
diff --git a/index.html b/index.html
index 53490c3..b904891 100644
--- a/index.html
+++ b/index.html
@@ -7,7 +7,7 @@
- AnyPyTools’ documentation! — AnyPyTools 1.7.1 documentation
+ AnyPyTools’ documentation! — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@ Navigation
-
next
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -97,11 +98,14 @@ Navigation
padding-left: .2em;
}
-
+
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from
Python.
-
+
+
+Don’t panic¶
+
Its main purpose is to launch AnyBody simulations and collect results. It has a
scheduler to launch multiple instances of AMS utilising computers with multiple
cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
@@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing.
+
See the Developer’s Guide for more information about contributing.
- Developer’s Guide
@@ -166,8 +170,8 @@ Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
-
next
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -269,7 +273,7 @@ Navigation
diff --git a/install_guide.html b/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/install_guide.html
+++ b/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
-
previous
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -101,7 +102,7 @@ Navigation
padding-left: .2em;
}
-
+
Install guide¶
Installation¶
@@ -170,7 +171,7 @@ Next page
This Page
@@ -225,7 +226,7 @@ Navigation
-
previous
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -233,7 +234,7 @@ Navigation
diff --git a/objects.inv b/objects.inv
index 48b69a3..53fdfdc 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/py-modindex.html b/py-modindex.html
index 54ec83d..d9098c5 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -57,7 +58,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -174,7 +175,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -182,7 +183,7 @@ Navigation
diff --git a/pytest_plugin.html b/pytest_plugin.html
index e96078e..a92479a 100644
--- a/pytest_plugin.html
+++ b/pytest_plugin.html
@@ -7,7 +7,7 @@
- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
-
previous
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -101,7 +102,7 @@ Navigation
padding-left: .2em;
}
-
+
PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a
pytest plugin for running and testing AnyBody models. The plugin make pytest
@@ -230,7 +231,7 @@
Next page
This Page
@@ -285,7 +286,7 @@ Navigation
-
previous
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -293,7 +294,7 @@ Navigation
diff --git a/search.html b/search.html
index 391bcb2..aaa7665 100644
--- a/search.html
+++ b/search.html
@@ -7,7 +7,7 @@
- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
@@ -19,6 +19,7 @@
+
@@ -60,7 +61,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -139,7 +140,7 @@ Navigation
-
toc
- - AnyPyTools 1.7.1 documentation »
+ - AnyPyTools 1.7.2 documentation »
@@ -147,7 +148,7 @@ Navigation
diff --git a/searchindex.js b/searchindex.js
index 6b3362d..729833d 100644
--- a/searchindex.js
+++ b/searchindex.js
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\ No newline at end of file
- @@ -253,14 +257,14 @@
Update and push the release log
Update version number in
anypytools.__init__.pyEnsure test pass
Make PR on GitHub, and check docs compile correctly on Github Actions
Create a tag with the version number and push it.
--
-
- Crate PYPI pckage
-
+
-
+
- Crate PYPI pckage
Run
python setup.py sdistRun
twine upload dist/*
Next page
@@ -392,7 +396,7 @@This Page
Navigation
- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
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- AnyPyTools 1.7.1 documentation » +
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- next -
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- AnyPyTools 1.7.2 documentation » @@ -97,11 +98,14 @@
- Developer’s Guide @@ -166,8 +170,8 @@
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- +
- @@ -209,7 +213,7 @@
- next -
- AnyPyTools 1.7.1 documentation » +
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- AnyPyTools 1.7.2 documentation » @@ -174,7 +175,7 @@
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- AnyPyTools 1.7.2 documentation » @@ -147,7 +148,7 @@
- previous -
- AnyPyTools 1.7.1 documentation » +
- AnyPyTools 1.7.2 documentation » @@ -101,9 +102,12 @@
- @@ -253,14 +257,14 @@
Update and push the release log
Update version number in
anypytools.__init__.pyEnsure test pass
Make PR on GitHub, and check docs compile correctly on Github Actions
Create a tag with the version number and push it.
--
-
- Crate PYPI pckage
-
+
-
+
- Crate PYPI pckage
Run
python setup.py sdistRun
twine upload dist/*
Next page
@@ -392,7 +396,7 @@This Page
Navigation
- previous
-- AnyPyTools 1.7.1 documentation »
+- AnyPyTools 1.7.2 documentation »
@@ -400,7 +404,7 @@Navigation
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- +
- @@ -209,7 +213,7 @@
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- AnyPyTools 1.7.1 documentation » +
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- AnyPyTools 1.7.2 documentation » @@ -101,7 +102,7 @@
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- AnyPyTools 1.7.1 documentation » +
- AnyPyTools 1.7.2 documentation » @@ -174,7 +175,7 @@
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- AnyPyTools 1.7.1 documentation » +
- AnyPyTools 1.7.2 documentation » @@ -182,7 +183,7 @@
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- AnyPyTools 1.7.1 documentation » +
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- AnyPyTools 1.7.1 documentation » +
- AnyPyTools 1.7.2 documentation » @@ -147,7 +148,7 @@
Maintenance Tasks
Performing the Release¶
-
+
diff --git a/dev/genindex.html b/dev/genindex.html
index 51ca048..862540f 100644
--- a/dev/genindex.html
+++ b/dev/genindex.html
@@ -7,7 +7,7 @@
- Index — AnyPyTools 1.7.1 documentation
+ Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@ Navigation
Navigation
Navigation
diff --git a/dev/index.html b/dev/index.html
index 53490c3..b904891 100644
--- a/dev/index.html
+++ b/dev/index.html
@@ -7,7 +7,7 @@
- AnyPyTools’ documentation! — AnyPyTools 1.7.1 documentation
+ AnyPyTools’ documentation! — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from
Python.
-
+
+
+Don’t panic¶
+
Its main purpose is to launch AnyBody simulations and collect results. It has a
scheduler to launch multiple instances of AMS utilising computers with multiple
cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
@@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing.
+
See the Developer’s Guide for more information about contributing.
Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
@@ -269,7 +273,7 @@ Navigation
diff --git a/dev/install_guide.html b/dev/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/dev/install_guide.html
+++ b/dev/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
Install guide¶
Installation¶
@@ -170,7 +171,7 @@ Next page
This Page
@@ -225,7 +226,7 @@ Navigation
Navigation
diff --git a/dev/objects.inv b/dev/objects.inv
index 48b69a3..53fdfdc 100644
Binary files a/dev/objects.inv and b/dev/objects.inv differ
diff --git a/dev/py-modindex.html b/dev/py-modindex.html
index 54ec83d..d9098c5 100644
--- a/dev/py-modindex.html
+++ b/dev/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -57,7 +58,7 @@ Navigation
Navigation
Navigation
diff --git a/dev/pytest_plugin.html b/dev/pytest_plugin.html
index e96078e..a92479a 100644
--- a/dev/pytest_plugin.html
+++ b/dev/pytest_plugin.html
@@ -7,7 +7,7 @@
- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a
pytest plugin for running and testing AnyBody models. The plugin make pytest
@@ -230,7 +231,7 @@
Next page
This Page
@@ -285,7 +286,7 @@ Navigation
Navigation
diff --git a/dev/search.html b/dev/search.html
index 391bcb2..aaa7665 100644
--- a/dev/search.html
+++ b/dev/search.html
@@ -7,7 +7,7 @@
- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
@@ -19,6 +19,7 @@
+
@@ -60,7 +61,7 @@ Navigation
Navigation
Navigation
diff --git a/dev/searchindex.js b/dev/searchindex.js
index 6b3362d..729833d 100644
--- a/dev/searchindex.js
+++ b/dev/searchindex.js
@@ -1 +1 @@
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diff --git a/devguide.html b/devguide.html
index 61af5e1..dc1fc67 100644
--- a/devguide.html
+++ b/devguide.html
@@ -7,7 +7,7 @@
- Developer’s Guide — AnyPyTools 1.7.1 documentation
+ Developer’s Guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
-Developer’s Guide¶
-
+
+Developer’s Guide¶
+
+
+Don’t panic¶
+
This is place for developer information that does not belong in the user
guides or the API reference, but is useful for people developing or contributing
to AnyPyTools.
@@ -203,7 +207,7 @@ Python Hooks
Building the Website¶
Building the website/documentation requires the following dependencies:
-
+
Maintenance Tasks
Performing the Release¶
-
+
diff --git a/genindex.html b/genindex.html
index 51ca048..862540f 100644
--- a/genindex.html
+++ b/genindex.html
@@ -7,7 +7,7 @@
- Index — AnyPyTools 1.7.1 documentation
+ Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@ Navigation
Navigation
Navigation
diff --git a/index.html b/index.html
index 53490c3..b904891 100644
--- a/index.html
+++ b/index.html
@@ -7,7 +7,7 @@
- AnyPyTools’ documentation! — AnyPyTools 1.7.1 documentation
+ AnyPyTools’ documentation! — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from
Python.
-
+
+
+Don’t panic¶
+
Its main purpose is to launch AnyBody simulations and collect results. It has a
scheduler to launch multiple instances of AMS utilising computers with multiple
cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
@@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing.
+
See the Developer’s Guide for more information about contributing.
Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
@@ -269,7 +273,7 @@ Navigation
diff --git a/install_guide.html b/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/install_guide.html
+++ b/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
Install guide¶
Installation¶
@@ -170,7 +171,7 @@ Next page
This Page
@@ -225,7 +226,7 @@ Navigation
Navigation
diff --git a/objects.inv b/objects.inv
index 48b69a3..53fdfdc 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/py-modindex.html b/py-modindex.html
index 54ec83d..d9098c5 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -57,7 +58,7 @@ Navigation
Navigation
Navigation
diff --git a/pytest_plugin.html b/pytest_plugin.html
index e96078e..a92479a 100644
--- a/pytest_plugin.html
+++ b/pytest_plugin.html
@@ -7,7 +7,7 @@
- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a
pytest plugin for running and testing AnyBody models. The plugin make pytest
@@ -230,7 +231,7 @@
Next page
This Page
@@ -285,7 +286,7 @@ Navigation
Navigation
diff --git a/search.html b/search.html
index 391bcb2..aaa7665 100644
--- a/search.html
+++ b/search.html
@@ -7,7 +7,7 @@
- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
@@ -19,6 +19,7 @@
+
@@ -60,7 +61,7 @@ Navigation
Navigation
Navigation
diff --git a/searchindex.js b/searchindex.js
index 6b3362d..729833d 100644
--- a/searchindex.js
+++ b/searchindex.js
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-
+
Navigation
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+
+
diff --git a/dev/install_guide.html b/dev/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/dev/install_guide.html
+++ b/dev/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from Python.
-
+
+
+
+Don’t panic¶
+Its main purpose is to launch AnyBody simulations and collect results. It has a scheduler to launch multiple instances of AMS utilising computers with multiple cores. AnyPyTools makes it easy to do parameter and sensitivity and many other @@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing. +
See the Developer’s Guide for more information about contributing.
Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
@@ -269,7 +273,7 @@ Navigation
Next page
This Page
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padding-left: .2em; } -
+
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diff --git a/dev/objects.inv b/dev/objects.inv
index 48b69a3..53fdfdc 100644
Binary files a/dev/objects.inv and b/dev/objects.inv differ
diff --git a/dev/py-modindex.html b/dev/py-modindex.html
index 54ec83d..d9098c5 100644
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+++ b/dev/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -57,7 +58,7 @@
diff --git a/dev/pytest_plugin.html b/dev/pytest_plugin.html
index e96078e..a92479a 100644
--- a/dev/pytest_plugin.html
+++ b/dev/pytest_plugin.html
@@ -7,7 +7,7 @@
- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Developer’s Guide — AnyPyTools 1.7.1 documentation
+ Developer’s Guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
Install guide¶
Installation¶
@@ -170,7 +171,7 @@Next page
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diff --git a/dev/search.html b/dev/search.html
index 391bcb2..aaa7665 100644
--- a/dev/search.html
+++ b/dev/search.html
@@ -7,7 +7,7 @@
- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
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+
@@ -60,7 +61,7 @@
diff --git a/dev/searchindex.js b/dev/searchindex.js
index 6b3362d..729833d 100644
--- a/dev/searchindex.js
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diff --git a/devguide.html b/devguide.html
index 61af5e1..dc1fc67 100644
--- a/devguide.html
+++ b/devguide.html
@@ -7,7 +7,7 @@
- PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a pytest plugin for running and testing AnyBody models. The plugin make pytest @@ -230,7 +231,7 @@
Next page
This Page
Navigation
Navigation
Navigation
Navigation
Navigation
Navigation
Navigation
padding-left: .2em; } -
-
+
Developer’s Guide¶
-
+
+Python Hooks
Developer’s Guide¶
+
+
+
+Don’t panic¶
+This is place for developer information that does not belong in the user guides or the API reference, but is useful for people developing or contributing to AnyPyTools.
@@ -203,7 +207,7 @@Python Hooks
Building the Website¶
Building the website/documentation requires the following dependencies:
-
+
Maintenance Tasks
Performing the Release¶
-
+
diff --git a/genindex.html b/genindex.html
index 51ca048..862540f 100644
--- a/genindex.html
+++ b/genindex.html
@@ -7,7 +7,7 @@
- Index — AnyPyTools 1.7.1 documentation
+ Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@ Navigation
Navigation
Navigation
diff --git a/index.html b/index.html
index 53490c3..b904891 100644
--- a/index.html
+++ b/index.html
@@ -7,7 +7,7 @@
- AnyPyTools’ documentation! — AnyPyTools 1.7.1 documentation
+ AnyPyTools’ documentation! — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from
Python.
-
+
+
+Don’t panic¶
+
Its main purpose is to launch AnyBody simulations and collect results. It has a
scheduler to launch multiple instances of AMS utilising computers with multiple
cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
@@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing.
+
See the Developer’s Guide for more information about contributing.
Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
@@ -269,7 +273,7 @@ Navigation
diff --git a/install_guide.html b/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/install_guide.html
+++ b/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
Install guide¶
Installation¶
@@ -170,7 +171,7 @@ Next page
This Page
@@ -225,7 +226,7 @@ Navigation
Navigation
diff --git a/objects.inv b/objects.inv
index 48b69a3..53fdfdc 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/py-modindex.html b/py-modindex.html
index 54ec83d..d9098c5 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -57,7 +58,7 @@ Navigation
Navigation
Navigation
diff --git a/pytest_plugin.html b/pytest_plugin.html
index e96078e..a92479a 100644
--- a/pytest_plugin.html
+++ b/pytest_plugin.html
@@ -7,7 +7,7 @@
- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a
pytest plugin for running and testing AnyBody models. The plugin make pytest
@@ -230,7 +231,7 @@
Next page
This Page
@@ -285,7 +286,7 @@ Navigation
Navigation
diff --git a/search.html b/search.html
index 391bcb2..aaa7665 100644
--- a/search.html
+++ b/search.html
@@ -7,7 +7,7 @@
- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
@@ -19,6 +19,7 @@
+
@@ -60,7 +61,7 @@ Navigation
Navigation
Navigation
diff --git a/searchindex.js b/searchindex.js
index 6b3362d..729833d 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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Maintenance Tasks
Performing the Release¶
-
+
diff --git a/genindex.html b/genindex.html
index 51ca048..862540f 100644
--- a/genindex.html
+++ b/genindex.html
@@ -7,7 +7,7 @@
- Index — AnyPyTools 1.7.1 documentation
+ Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -54,7 +55,7 @@ Navigation
Navigation
Navigation
diff --git a/index.html b/index.html
index 53490c3..b904891 100644
--- a/index.html
+++ b/index.html
@@ -7,7 +7,7 @@
- AnyPyTools’ documentation! — AnyPyTools 1.7.1 documentation
+ AnyPyTools’ documentation! — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -58,7 +59,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from
Python.
-
+
+
+Don’t panic¶
+
Its main purpose is to launch AnyBody simulations and collect results. It has a
scheduler to launch multiple instances of AMS utilising computers with multiple
cores. AnyPyTools makes it easy to do parameter and sensitivity and many other
@@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing.
+
See the Developer’s Guide for more information about contributing.
Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
@@ -269,7 +273,7 @@ Navigation
diff --git a/install_guide.html b/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/install_guide.html
+++ b/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
Install guide¶
Installation¶
@@ -170,7 +171,7 @@ Next page
This Page
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Navigation
diff --git a/objects.inv b/objects.inv
index 48b69a3..53fdfdc 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/py-modindex.html b/py-modindex.html
index 54ec83d..d9098c5 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
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+
@@ -57,7 +58,7 @@ Navigation
Navigation
Navigation
diff --git a/pytest_plugin.html b/pytest_plugin.html
index e96078e..a92479a 100644
--- a/pytest_plugin.html
+++ b/pytest_plugin.html
@@ -7,7 +7,7 @@
- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@ Navigation
Navigation
padding-left: .2em;
}
-
+
PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a
pytest plugin for running and testing AnyBody models. The plugin make pytest
@@ -230,7 +231,7 @@
Next page
This Page
@@ -285,7 +286,7 @@ Navigation
Navigation
diff --git a/search.html b/search.html
index 391bcb2..aaa7665 100644
--- a/search.html
+++ b/search.html
@@ -7,7 +7,7 @@
- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
@@ -19,6 +19,7 @@
+
@@ -60,7 +61,7 @@ Navigation
Navigation
Navigation
diff --git a/searchindex.js b/searchindex.js
index 6b3362d..729833d 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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+
Navigation
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+
+
diff --git a/install_guide.html b/install_guide.html
index 9bb908e..ed4c5df 100644
--- a/install_guide.html
+++ b/install_guide.html
@@ -7,7 +7,7 @@
- Install guide — AnyPyTools 1.7.1 documentation
+ Install guide — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
AnyPyTools’ documentation!¶
AnyPyTools is a toolkit for working with the AnyBody Modeling System (AMS) from Python.
-
+
+
+
+Don’t panic¶
+Its main purpose is to launch AnyBody simulations and collect results. It has a scheduler to launch multiple instances of AMS utilising computers with multiple cores. AnyPyTools makes it easy to do parameter and sensitivity and many other @@ -153,7 +157,7 @@
DevelopmentDeveloper’s Guide for more information about contributing. +
See the Developer’s Guide for more information about contributing.
Usefull linksnew issue on GitHub
-Next page
This Page
@@ -261,7 +265,7 @@ Navigation
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@@ -225,7 +226,7 @@
diff --git a/objects.inv b/objects.inv
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diff --git a/py-modindex.html b/py-modindex.html
index 54ec83d..d9098c5 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — AnyPyTools 1.7.1 documentation
+ Python Module Index — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -57,7 +58,7 @@
diff --git a/pytest_plugin.html b/pytest_plugin.html
index e96078e..a92479a 100644
--- a/pytest_plugin.html
+++ b/pytest_plugin.html
@@ -7,7 +7,7 @@
- PyTest plugin. — AnyPyTools 1.7.1 documentation
+ PyTest plugin. — AnyPyTools 1.7.2 documentation
@@ -18,6 +18,7 @@
+
@@ -62,7 +63,7 @@
Install guide¶
Installation¶
@@ -170,7 +171,7 @@Next page
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Navigation
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diff --git a/search.html b/search.html
index 391bcb2..aaa7665 100644
--- a/search.html
+++ b/search.html
@@ -7,7 +7,7 @@
- Search — AnyPyTools 1.7.1 documentation
+ Search — AnyPyTools 1.7.2 documentation
@@ -19,6 +19,7 @@
+
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index 6b3362d..729833d 100644
--- a/searchindex.js
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PyTest plugin.¶
Pytest is a fantastic test framework for Python code. AnyPyTools provides a pytest plugin for running and testing AnyBody models. The plugin make pytest @@ -230,7 +231,7 @@