deploy: AnyBody-Research-Group/AnyPyTools@c7f986c

AnyBody-Research-Group · Sep 28, 2021 · e8eaa45 · e8eaa45
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 8b074758392285ed8cea1b85521679eb
+config: 0fbb4f1693edf2c8e697f04a2f5f1434
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/Tutorial/01_Getting_started_with_anypytools.html b/Tutorial/01_Getting_started_with_anypytools.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Getting Started with AnyPyTools &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>Getting Started with AnyPyTools &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/table_styling.css" />
@@ -65,7 +65,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../install_guide.html" title="Install guide"
              accesskey="P">previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Getting Started with AnyPyTools</a></li> 
       </ul>
@@ -675,7 +675,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../install_guide.html" title="Install guide"
              >previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Getting Started with AnyPyTools</a></li> 
       </ul>

diff --git a/Tutorial/02_Generating_macros.html b/Tutorial/02_Generating_macros.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Creating AnyScript Macros &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>Creating AnyScript Macros &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/table_styling.css" />
@@ -65,7 +65,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="01_Getting_started_with_anypytools.html" title="Getting Started with AnyPyTools"
              accesskey="P">previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Creating AnyScript Macros</a></li> 
       </ul>
@@ -759,7 +759,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="01_Getting_started_with_anypytools.html" title="Getting Started with AnyPyTools"
              >previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Creating AnyScript Macros</a></li> 
       </ul>

diff --git a/Tutorial/03_Working_with_output_from_Anybody.html b/Tutorial/03_Working_with_output_from_Anybody.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Working with data from AnyBody &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>Working with data from AnyBody &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/table_styling.css" />
@@ -65,7 +65,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="02_Generating_macros.html" title="Creating AnyScript Macros"
              accesskey="P">previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Working with data from AnyBody</a></li> 
       </ul>
@@ -852,7 +852,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="02_Generating_macros.html" title="Creating AnyScript Macros"
              >previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Working with data from AnyBody</a></li> 
       </ul>

diff --git a/Tutorial/04_Batch_processing_multiple_models.html b/Tutorial/04_Batch_processing_multiple_models.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Batch processing &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>Batch processing &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/table_styling.css" />
@@ -65,7 +65,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="03_Working_with_output_from_Anybody.html" title="Working with data from AnyBody"
              accesskey="P">previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Batch processing</a></li> 
       </ul>
@@ -536,7 +536,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="03_Working_with_output_from_Anybody.html" title="Working with data from AnyBody"
              >previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Batch processing</a></li> 
       </ul>

diff --git a/Tutorial/05_Monte_Carlo_studies_etc.html b/Tutorial/05_Monte_Carlo_studies_etc.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Advanced Examples &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>Advanced Examples &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/table_styling.css" />
@@ -65,7 +65,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="04_Batch_processing_multiple_models.html" title="Batch processing"
              accesskey="P">previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Advanced Examples</a></li> 
       </ul>
@@ -809,7 +809,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="04_Batch_processing_multiple_models.html" title="Batch processing"
              >previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Advanced Examples</a></li> 
       </ul>

diff --git a/Tutorial/06_Tips&Tricks.html b/Tutorial/06_Tips&Tricks.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Tips &amp; Trics for anypytools &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>Tips &amp; Trics for anypytools &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/table_styling.css" />
@@ -65,7 +65,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="05_Monte_Carlo_studies_etc.html" title="Advanced Examples"
              accesskey="P">previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Tips &amp; Trics for anypytools</a></li> 
       </ul>
@@ -825,7 +825,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="05_Monte_Carlo_studies_etc.html" title="Advanced Examples"
              >previous</a> &nbsp; &nbsp;</li>
-    <li><a href="../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
         <li class="nav-item nav-item-this"><a href="">Tips &amp; Trics for anypytools</a></li> 
       </ul>

diff --git a/_modules/anypytools/abcutils.html b/_modules/anypytools/abcutils.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>anypytools.abcutils &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>anypytools.abcutils &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../../_static/table_styling.css" />
@@ -55,7 +55,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              accesskey="C">toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.abcutils</a></li> 
@@ -308,7 +308,8 @@ <h1>Source code for anypytools.abcutils</h1><div class="highlight"><pre>
             <span class="sa">f</span><span class="s1">&#39; -m &quot;</span><span class="si">{</span><span class="n">winepath</span><span class="p">(</span><span class="n">macrofile_path</span><span class="p">,</span> <span class="s2">&quot;--windows&quot;</span><span class="p">)</span><span class="si">}</span><span class="s1">&quot;&#39;</span>
             <span class="sa">f</span><span class="s2">&quot; -deb </span><span class="si">{</span><span class="nb">str</span><span class="p">(</span><span class="n">debug_mode</span><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span>
             <span class="s2">&quot; -ni&quot;</span>
-            <span class="sa">f</span><span class="s1">&#39; &gt;&gt; &quot;</span><span class="si">{</span><span class="n">winepath</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">logfile</span><span class="o">.</span><span class="n">name</span><span class="p">),</span> <span class="s2">&quot;--windows&quot;</span><span class="p">)</span><span class="si">}</span><span class="s1">&quot;&#39;</span>
+            <span class="sa">f</span><span class="s1">&#39; &gt;&gt; &quot;</span><span class="si">{</span><span class="n">winepath</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">logfile</span><span class="o">.</span><span class="n">name</span><span class="p">),</span> <span class="s2">&quot;--windows&quot;</span><span class="p">)</span><span class="si">}</span><span class="s1">&quot;</span><span class="se">\n</span><span class="s1">&#39;</span>
+            <span class="sa">r</span><span class="s2">&quot;@exit /b </span><span class="si">%E</span><span class="s2">RRORLEVEL%&quot;</span>
         <span class="p">)</span>
         <span class="c1"># Wine can have problems with arbitrary names. Create simple uniqe name for the file</span>
         <span class="n">hash_id</span> <span class="o">=</span> <span class="nb">abs</span><span class="p">(</span><span class="nb">hash</span><span class="p">(</span><span class="n">logfile</span><span class="o">.</span><span class="n">name</span><span class="p">))</span> <span class="o">%</span> <span class="p">(</span><span class="mi">10</span> <span class="o">**</span> <span class="mi">8</span><span class="p">)</span>
@@ -318,7 +319,7 @@ <h1>Source code for anypytools.abcutils</h1><div class="highlight"><pre>
 
         <span class="kn">from</span> <span class="nn">shlex</span> <span class="kn">import</span> <span class="n">quote</span>
 
-        <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;wine&quot;</span><span class="p">,</span> <span class="s2">&quot;cmd&quot;</span><span class="p">,</span> <span class="s2">&quot;/c&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">batfile</span><span class="p">)</span> <span class="o">+</span> <span class="s2">&quot; &amp; exit&quot;</span><span class="p">]</span>
+        <span class="n">cmd</span> <span class="o">=</span> <span class="p">[</span><span class="s2">&quot;wine&quot;</span><span class="p">,</span> <span class="s2">&quot;cmd&quot;</span><span class="p">,</span> <span class="s2">&quot;/c&quot;</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">batfile</span><span class="p">)]</span>
         <span class="n">proc</span> <span class="o">=</span> <span class="n">Popen</span><span class="p">(</span><span class="n">cmd</span><span class="p">,</span> <span class="n">env</span><span class="o">=</span><span class="n">env</span><span class="p">,</span> <span class="n">cwd</span><span class="o">=</span><span class="n">folder</span><span class="p">)</span>
 
     <span class="n">_subprocess_container</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">proc</span><span class="o">.</span><span class="n">pid</span><span class="p">)</span>
@@ -1077,7 +1078,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              >toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.abcutils</a></li> 

diff --git a/_modules/anypytools/datautils.html b/_modules/anypytools/datautils.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>anypytools.datautils &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>anypytools.datautils &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../../_static/table_styling.css" />
@@ -55,7 +55,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              accesskey="C">toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.datautils</a></li> 
@@ -332,7 +332,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              >toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.datautils</a></li> 

diff --git a/_modules/anypytools/h5py_wrapper.html b/_modules/anypytools/h5py_wrapper.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>anypytools.h5py_wrapper &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>anypytools.h5py_wrapper &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../../_static/table_styling.css" />
@@ -55,7 +55,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              accesskey="C">toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.h5py_wrapper</a></li> 
@@ -290,7 +290,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              >toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.h5py_wrapper</a></li> 

diff --git a/_modules/anypytools/macroutils.html b/_modules/anypytools/macroutils.html
@@ -7,7 +7,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>anypytools.macroutils &#8212; AnyPyTools 1.7.4 documentation</title>
+    <title>anypytools.macroutils &#8212; AnyPyTools 1.7.5 documentation</title>
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/cloud.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../../_static/table_styling.css" />
@@ -55,7 +55,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              accesskey="C">toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" accesskey="U">Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.macroutils</a></li> 
@@ -1050,7 +1050,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../index.html" title="Table Of Contents"
              >toc</a> &nbsp; &nbsp;</li>
-    <li><a href="../../index.html">AnyPyTools 1.7.4 documentation</a> &#187;</li>
+    <li><a href="../../index.html">AnyPyTools 1.7.5 documentation</a> &#187;</li>
 
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">anypytools.macroutils</a></li>