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Implement workflows for common platforms and use cases #13

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abearab opened this issue Dec 12, 2023 · 1 comment
Closed
8 tasks done

Implement workflows for common platforms and use cases #13

abearab opened this issue Dec 12, 2023 · 1 comment
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essential An essential feature good first issue Good for newcomers
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Benchmark ScreenP...

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abearab commented Dec 12, 2023 •
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Core features:

CRISPR screen assays

Irrespective of the CRISPR screen platform used upstream, there are various experimental assays. For commonly used assays, our goal is to create Python classes to manage data and conduct analysis accordingly.

PooledScreens common use cases

  • Workflow for survival screens #20
  • Add compatibility for cas9 V3 library
    (i.e. single oligo with dual guides per gene, see this)
  • Add compatibility for cas9 V2 library
    (i.e. multiple guides per gene)

GImaps

[coming soon]

Also see #12 and #10

Related source issues – GilbertLabUCSF/ScreenPro2#11, GilbertLabUCSF/ScreenPro2#18
@abearab abearab changed the title Implement workflows for common CRISPR Screen platforms and use cases Implement workflows for common platforms and use cases Dec 12, 2023
@abearab abearab added good first issue Good for newcomers essential An essential feature labels Dec 12, 2023
@abearab abearab pinned this issue Dec 12, 2023
@abearab abearab mentioned this issue Mar 4, 2024
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@abearab abearab self-assigned this Apr 17, 2024
@abearab abearab removed this from the Release command line interface (CLI) milestone May 7, 2024
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@abearab abearab closed this as completed May 28, 2024
@abearab abearab unpinned this issue May 28, 2024
@abearab abearab reopened this Aug 7, 2024
This was referenced Aug 7, 2024
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@abearab abearab closed this as completed Aug 10, 2024
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