From 0669432cc3740a591b661864dfe64308ec8a91d9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Artur=20Oleksi=C5=84ski?= Date: Tue, 22 Oct 2024 15:28:16 +0200 Subject: [PATCH] Poetry build (#18) * Introduction of poetry to build process * Correction of dockerfiles * Deletion of requirements directory --- docker/build_dev/dockerfile | 9 +- docker/integration_tests/docker-compose.yml | 2 +- docker/integration_tests/dockerfile | 11 +- docker/unit_tests/docker-compose.yml | 2 +- docker/unit_tests/dockerfile | 12 +- makefile | 40 + poetry.lock | 3050 +++++++++++++++++++ pyproject.toml | 41 +- requirements/base.txt | 13 - requirements/test.txt | 4 - 10 files changed, 3139 insertions(+), 45 deletions(-) create mode 100644 makefile create mode 100644 poetry.lock delete mode 100644 requirements/base.txt delete mode 100644 requirements/test.txt diff --git a/docker/build_dev/dockerfile b/docker/build_dev/dockerfile index a9c5e1d..4ea566c 100644 --- a/docker/build_dev/dockerfile +++ b/docker/build_dev/dockerfile @@ -1,14 +1,15 @@ FROM ubuntu:22.04 ENV DEBIAN_FRONTEND=noninteractive +ENV POETRY_HOME="/root/.poetry" +ENV PATH="$POETRY_HOME/bin:$PATH" CMD ["bash"] RUN apt-get update -RUN apt-get install -y python3 python3-pip -RUN pip3 install torch --index-url https://download.pytorch.org/whl/cpu +RUN apt-get install -y python3 python3-pip curl +RUN curl -sSL https://install.python-poetry.org | python3 - -COPY ./requirements /ragger/requirements WORKDIR /ragger -RUN pip install -r requirements/test.txt COPY . /ragger +RUN make install \ No newline at end of file diff --git a/docker/integration_tests/docker-compose.yml b/docker/integration_tests/docker-compose.yml index ca6c7a8..703e67e 100644 --- a/docker/integration_tests/docker-compose.yml +++ b/docker/integration_tests/docker-compose.yml @@ -23,5 +23,5 @@ services: environment: - SSL_CERT_DIR=/etc/ssl/certs command: > - bash -c "python3 -m pytest ./test/integration_tests || exit 1" + bash -c "poetry run pytest ./test/integration_tests || exit 1" && docker-compose down diff --git a/docker/integration_tests/dockerfile b/docker/integration_tests/dockerfile index 4dca895..09c9bb8 100644 --- a/docker/integration_tests/dockerfile +++ b/docker/integration_tests/dockerfile @@ -1,24 +1,25 @@ FROM ubuntu:22.04 ENV DEBIAN_FRONTEND=noninteractive +ENV POETRY_HOME="/root/.poetry" +ENV PATH="$POETRY_HOME/bin:$PATH" CMD ["bash"] RUN apt-get update --fix-missing -RUN apt-get install -y python3 python3-pip git ca-certificates lsb-release ubuntu-keyring software-properties-common +RUN apt-get install -y python3 python3-pip git ca-certificates lsb-release ubuntu-keyring software-properties-common curl +RUN curl -sSL https://install.python-poetry.org | python3 - + RUN update-ca-certificates --fresh RUN export SSL_CERT_DIR=/etc/ssl/certs RUN apt install -y tesseract-ocr RUN apt install -y libtesseract-dev RUN apt install -y poppler-utils -COPY ./requirements /ragger/requirements WORKDIR /ragger RUN pip install --upgrade pip -RUN pip install -r requirements/test.txt -RUN python3 -m spacy download en_core_web_sm COPY . /ragger RUN touch logs.log -RUN pip install . +RUN make install RUN export GIT_PYTHON_GIT_EXECUTABLE=$(which git) diff --git a/docker/unit_tests/docker-compose.yml b/docker/unit_tests/docker-compose.yml index 3a08608..a3402a7 100644 --- a/docker/unit_tests/docker-compose.yml +++ b/docker/unit_tests/docker-compose.yml @@ -6,5 +6,5 @@ services: dockerfile: docker/unit_tests/dockerfile container_name: ragger command: > - bash -c "python3 -m pytest ./test/unit_tests || exit 1" + bash -c "poetry run pytest ./test/unit_tests || exit 1" && docker-compose down diff --git a/docker/unit_tests/dockerfile b/docker/unit_tests/dockerfile index 8a23a2a..d88a6b5 100644 --- a/docker/unit_tests/dockerfile +++ b/docker/unit_tests/dockerfile @@ -1,23 +1,23 @@ FROM ubuntu:22.04 ENV DEBIAN_FRONTEND=noninteractive +ENV POETRY_HOME="/root/.poetry" +ENV PATH="$POETRY_HOME/bin:$PATH" CMD ["bash"] RUN apt-get update -RUN apt-get install -y python3 python3-pip git -RUN pip3 install torch --index-url https://download.pytorch.org/whl/cpu +RUN apt-get install -y python3 python3-pip git curl +RUN curl -sSL https://install.python-poetry.org | python3 - + RUN apt install -y tesseract-ocr RUN apt install -y libtesseract-dev RUN apt install -y poppler-utils -COPY ./requirements /ragger/requirements WORKDIR /ragger RUN pip install --upgrade pip -RUN pip install -r requirements/test.txt -RUN python3 -m spacy download en_core_web_sm COPY . /ragger RUN touch logs.log -RUN pip install . +RUN make install RUN export GIT_PYTHON_GIT_EXECUTABLE=$(which git) diff --git a/makefile b/makefile new file mode 100644 index 0000000..9b7fce2 --- /dev/null +++ b/makefile @@ -0,0 +1,40 @@ +# Use Poetry for dependency management and running tasks + +# Target to install dependencies +install: + poetry install + +# Target to update dependencies +update: + poetry update + +# Target to export requirements.txt for compatibility +requirements: + poetry export -f requirements.txt --output requirements/base.txt --without-hashes + +# Target to run linting +lint: + poetry run flake8 . + +# Target to run the application + poetry run python src/main.py + +# Clean up cache files, etc. +clean: + rm -rf .pytest_cache .mypy_cache + find . -name "*.pyc" -delete + +# Target to build the package +build: + poetry build + +# Help target to display available commands +help: + @echo "Available commands:" + @echo " install Install project dependencies" + @echo " update Update project dependencies" + @echo " requirements Export dependencies to requirements.txt" + @echo " lint Run linting" + @echo " run Run the application" + @echo " clean Remove cache files" + @echo " build Build the package" \ No newline at end of file diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..6767479 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,3050 @@ +# This file is automatically @generated by Poetry 1.8.4 and 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text = ["GPL-3.0"], file = "LICENSE" } +license = "GPL-3.0" readme = "README.md" keywords = ["semantic search", "ocr", "rag", "document-embedding", "contextual-search", "retrieval-augmented-generation", "pdf"] -dynamic = ["dependencies"] +packages = [{include = "context_search", from="src"}] -[build-system] -requires = ["setuptools>=42", "wheel"] -build-backend = "setuptools.build_meta" +[tool.poetry.dependencies] +python = "^3.10" +neo4j = "^5.25.0" +pdf2image = "^1.17.0" +pydantic = "^2.9.2" +PyMuPDF = "^1.24.10" +pytesseract = "^0.3.13" +pytextrank = "^3.3.0" +spacy = "^3.8.2" +tqdm = "^4.66.5" +transformers = "^4.45.1" +numpy = "^2.0.2" +torch = { version = "^2.3.1", source = "torch"} +en_core_web_sm = {url = "https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-3.8.0/en_core_web_sm-3.8.0.tar.gz"} + +[tool.poetry.dev-dependencies] +pytest = "^8.3.2" +pytest-mock = "^3.14.0" +pytest-cov = "^5.0.0" -[tool.setuptools.dynamic] -dependencies = {file = ["requirements\base.txt"]} +[[tool.poetry.source]] +name = "torch" +url = "https://download.pytorch.org/whl/cpu" +priority = "supplemental" -[tool.setuptools.packages.find] -where = ["src"] +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/requirements/base.txt b/requirements/base.txt deleted file mode 100644 index 62a07ac..0000000 --- a/requirements/base.txt +++ /dev/null @@ -1,13 +0,0 @@ -neo4j==5.25.0 -pdf2image==1.17.0 -pydantic==2.9.2 -PyMuPDF==1.24.10 -pytesseract -pytextrank -spacy -tqdm -transformers==4.45.1 -numpy -scipy ---find-links https://download.pytorch.org/whl/torch_stable.html -torch==2.3.1+cpu \ No newline at end of file diff --git a/requirements/test.txt b/requirements/test.txt deleted file mode 100644 index 9927db3..0000000 --- a/requirements/test.txt +++ /dev/null @@ -1,4 +0,0 @@ --r base.txt -pytest >= 8.3.2 -pytest-mock -pytest-cov \ No newline at end of file