From 55e9d0fc61304f49ec3ca7d2efe8d7e9e82f4177 Mon Sep 17 00:00:00 2001
From: Ashton Bradley <ashton.bradley@gmail.com>
Date: Tue, 30 Apr 2024 10:27:47 +1200
Subject: [PATCH 1/5] update deps

---
 Manifest.toml          | 396 ++++++++++++++++++++++++-----------------
 Project.toml           |   2 +-
 test/creations_test.jl |  19 +-
 3 files changed, 249 insertions(+), 168 deletions(-)

diff --git a/Manifest.toml b/Manifest.toml
index ecbd996..a70cd80 100644
--- a/Manifest.toml
+++ b/Manifest.toml
@@ -1,24 +1,25 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.3"
+julia_version = "1.10.2"
 manifest_format = "2.0"
-project_hash = "2f1f589f0a8fd912dd3de3959a5ccbb618a55c35"
+project_hash = "17bedc7c2c277895f1208abe6a6ac33f8d90dcd2"
 
 [[deps.AbstractFFTs]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0"
+git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef"
 uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
-version = "1.3.1"
-weakdeps = ["ChainRulesCore"]
+version = "1.5.0"
+weakdeps = ["ChainRulesCore", "Test"]
 
     [deps.AbstractFFTs.extensions]
     AbstractFFTsChainRulesCoreExt = "ChainRulesCore"
+    AbstractFFTsTestExt = "Test"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
-git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24"
+git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099"
 uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
-version = "3.6.2"
+version = "4.0.4"
 weakdeps = ["StaticArrays"]
 
     [deps.Adapt.extensions]
@@ -50,9 +51,9 @@ version = "1.0.1"
 
 [[deps.BangBang]]
 deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"]
-git-tree-sha1 = "54b00d1b93791f8e19e31584bd30f2cb6004614b"
+git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3"
 uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66"
-version = "0.3.38"
+version = "0.3.40"
 
     [deps.BangBang.extensions]
     BangBangChainRulesCoreExt = "ChainRulesCore"
@@ -77,27 +78,31 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217"
 version = "0.1.1"
 
 [[deps.BitFlags]]
-git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d"
+git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b"
 uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
-version = "0.1.7"
+version = "0.1.8"
 
 [[deps.ChainRulesCore]]
-deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
+deps = ["Compat", "LinearAlgebra"]
+git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.16.0"
+version = "1.23.0"
+weakdeps = ["SparseArrays"]
+
+    [deps.ChainRulesCore.extensions]
+    ChainRulesCoreSparseArraysExt = "SparseArrays"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83"
+git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.1"
+version = "0.7.4"
 
 [[deps.Compat]]
-deps = ["UUIDs"]
-git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957"
+deps = ["TOML", "UUIDs"]
+git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.6.1"
+version = "4.14.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
     [deps.Compat.extensions]
@@ -106,7 +111,7 @@ weakdeps = ["Dates", "LinearAlgebra"]
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.0.5+0"
+version = "1.1.0+0"
 
 [[deps.CompositionsBase]]
 git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad"
@@ -121,21 +126,21 @@ version = "0.1.2"
 
 [[deps.ConcurrentUtilities]]
 deps = ["Serialization", "Sockets"]
-git-tree-sha1 = "96d823b94ba8d187a6d8f0826e731195a74b90e9"
+git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1"
 uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
-version = "2.2.0"
+version = "2.4.1"
 
 [[deps.Conda]]
 deps = ["Downloads", "JSON", "VersionParsing"]
-git-tree-sha1 = "e32a90da027ca45d84678b826fffd3110bb3fc90"
+git-tree-sha1 = "51cab8e982c5b598eea9c8ceaced4b58d9dd37c9"
 uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
-version = "1.8.0"
+version = "1.10.0"
 
 [[deps.ConstructionBase]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "738fec4d684a9a6ee9598a8bfee305b26831f28c"
+git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2"
 uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
-version = "1.5.2"
+version = "1.5.5"
 
     [deps.ConstructionBase.extensions]
     ConstructionBaseIntervalSetsExt = "IntervalSets"
@@ -169,26 +174,26 @@ version = "4.1.1"
 
 [[deps.DSP]]
 deps = ["Compat", "FFTW", "IterTools", "LinearAlgebra", "Polynomials", "Random", "Reexport", "SpecialFunctions", "Statistics"]
-git-tree-sha1 = "da8b06f89fce9996443010ef92572b193f8dca1f"
+git-tree-sha1 = "f7f4319567fe769debfcf7f8c03d8da1dd4e2fb0"
 uuid = "717857b8-e6f2-59f4-9121-6e50c889abd2"
-version = "0.7.8"
+version = "0.7.9"
 
 [[deps.DataAPI]]
-git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c"
+git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.15.0"
+version = "1.16.0"
 
 [[deps.DataFrames]]
-deps = ["Compat", "DataAPI", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SnoopPrecompile", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "aa51303df86f8626a962fccb878430cdb0a97eee"
+deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
 uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "1.5.0"
+version = "1.6.1"
 
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0"
+git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.18.13"
+version = "0.18.20"
 
 [[deps.DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -205,10 +210,15 @@ uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52"
 version = "0.1.2"
 
 [[deps.Distances]]
-deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2"
+deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
+git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0"
 uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.8"
+version = "0.10.11"
+weakdeps = ["ChainRulesCore", "SparseArrays"]
+
+    [deps.Distances.extensions]
+    DistancesChainRulesCoreExt = "ChainRulesCore"
+    DistancesSparseArraysExt = "SparseArrays"
 
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
@@ -225,11 +235,17 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 version = "1.6.0"
 
+[[deps.ExceptionUnwrapping]]
+deps = ["Test"]
+git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a"
+uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4"
+version = "0.1.10"
+
 [[deps.FFTW]]
 deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"]
-git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe"
+git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d"
 uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
-version = "1.6.0"
+version = "1.8.0"
 
 [[deps.FFTW_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -251,18 +267,28 @@ version = "0.1.1"
 
 [[deps.FileIO]]
 deps = ["Pkg", "Requires", "UUIDs"]
-git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673"
+git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322"
 uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-version = "1.16.1"
+version = "1.16.3"
 
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
 
-[[deps.Formatting]]
-deps = ["Printf"]
-git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8"
-uuid = "59287772-0a20-5a39-b81b-1366585eb4c0"
-version = "0.4.2"
+[[deps.FillArrays]]
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "57f08d5665e76397e96b168f9acc12ab17c84a68"
+uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
+version = "1.10.2"
+
+    [deps.FillArrays.extensions]
+    FillArraysPDMatsExt = "PDMats"
+    FillArraysSparseArraysExt = "SparseArrays"
+    FillArraysStatisticsExt = "Statistics"
+
+    [deps.FillArrays.weakdeps]
+    PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150"
+    SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+    Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
 [[deps.Future]]
 deps = ["Random"]
@@ -270,20 +296,20 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
 [[deps.Graphs]]
 deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"]
-git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4"
+git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7"
 uuid = "86223c79-3864-5bf0-83f7-82e725a168b6"
-version = "1.8.0"
+version = "1.9.0"
 
 [[deps.HTTP]]
-deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "ba9eca9f8bdb787c6f3cf52cb4a404c0e349a0d1"
+deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
+git-tree-sha1 = "2c3ec1f90bb4a8f7beafb0cffea8a4c3f4e636ab"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.9.5"
+version = "1.10.6"
 
 [[deps.Inflate]]
-git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428"
+git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
-version = "0.1.3"
+version = "0.1.4"
 
 [[deps.InitialValues]]
 git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3"
@@ -297,10 +323,10 @@ uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
 version = "1.4.0"
 
 [[deps.IntelOpenMP_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "0cb9352ef2e01574eeebdb102948a58740dcaf83"
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4"
 uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
-version = "2023.1.0+0"
+version = "2024.1.0+0"
 
 [[deps.InteractiveUtils]]
 deps = ["Markdown"]
@@ -323,9 +349,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
 version = "0.2.2"
 
 [[deps.IterTools]]
-git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5"
+git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023"
 uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
-version = "1.4.0"
+version = "1.10.0"
 
 [[deps.IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
@@ -333,16 +359,16 @@ uuid = "82899510-4779-5014-852e-03e436cf321d"
 version = "1.0.0"
 
 [[deps.JLD2]]
-deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "42c17b18ced77ff0be65957a591d34f4ed57c631"
+deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
+git-tree-sha1 = "5ea6acdd53a51d897672edb694e3cc2912f3f8a7"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.31"
+version = "0.4.46"
 
 [[deps.JLLWrappers]]
-deps = ["Preferences"]
-git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
+deps = ["Artifacts", "Preferences"]
+git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.4.1"
+version = "1.5.0"
 
 [[deps.JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@@ -357,9 +383,9 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec"
 version = "0.2.4"
 
 [[deps.LaTeXStrings]]
-git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
+git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
 uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
-version = "1.3.0"
+version = "1.3.1"
 
 [[deps.LazyArtifacts]]
 deps = ["Artifacts", "Pkg"]
@@ -368,21 +394,26 @@ uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
-version = "0.6.3"
+version = "0.6.4"
 
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "7.84.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
-deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
+deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
+[[deps.LibGit2_jll]]
+deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
+uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
+version = "1.6.4+0"
+
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
 uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
-version = "1.10.2+0"
+version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
@@ -399,9 +430,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b"
+git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.23"
+version = "0.3.27"
 
     [deps.LogExpFunctions.extensions]
     LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
@@ -418,15 +449,15 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[deps.LoggingExtras]]
 deps = ["Dates", "Logging"]
-git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e"
+git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
 uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.0"
+version = "1.0.3"
 
 [[deps.MKL_jll]]
-deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
-git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9"
+deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"]
+git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b"
 uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
-version = "2022.2.0+0"
+version = "2024.1.0+0"
 
 [[deps.MLStyle]]
 git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8"
@@ -435,24 +466,24 @@ version = "0.4.17"
 
 [[deps.MacroTools]]
 deps = ["Markdown", "Random"]
-git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2"
+git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.10"
+version = "0.5.13"
 
 [[deps.Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [[deps.MbedTLS]]
-deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"]
-git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b"
+deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
+git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf"
 uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
-version = "1.1.7"
+version = "1.1.9"
 
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
-version = "2.28.2+0"
+version = "2.28.2+1"
 
 [[deps.MicroCollections]]
 deps = ["BangBang", "InitialValues", "Setfield"]
@@ -462,16 +493,16 @@ version = "0.1.4"
 
 [[deps.Missings]]
 deps = ["DataAPI"]
-git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272"
+git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d"
 uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
-version = "1.1.0"
+version = "1.2.0"
 
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
 [[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-version = "2022.10.11"
+version = "2023.1.10"
 
 [[deps.NameResolution]]
 deps = ["PrettyPrint"]
@@ -481,41 +512,44 @@ version = "0.1.5"
 
 [[deps.NearestNeighbors]]
 deps = ["Distances", "StaticArrays"]
-git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8"
+git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c"
 uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
-version = "0.4.13"
+version = "0.4.16"
 
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
 [[deps.OffsetArrays]]
-deps = ["Adapt"]
-git-tree-sha1 = "82d7c9e310fe55aa54996e6f7f94674e2a38fcb4"
+git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e"
 uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
-version = "1.12.9"
+version = "1.14.0"
+weakdeps = ["Adapt"]
+
+    [deps.OffsetArrays.extensions]
+    OffsetArraysAdaptExt = "Adapt"
 
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
-version = "0.3.21+4"
+version = "0.3.23+4"
 
 [[deps.OpenLibm_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
-version = "0.8.1+0"
+version = "0.8.1+2"
 
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
-git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2"
+git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4"
 uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c"
-version = "1.4.1"
+version = "1.4.3"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "6cc6366a14dbe47e5fc8f3cbe2816b1185ef5fc4"
+git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.0.8+0"
+version = "3.0.13+1"
 
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
@@ -524,9 +558,9 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
 version = "0.5.5+0"
 
 [[deps.OrderedCollections]]
-git-tree-sha1 = "d321bf2de576bf25ec4d3e4360faca399afca282"
+git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.6.0"
+version = "1.6.3"
 
 [[deps.Parameters]]
 deps = ["OrderedCollections", "UnPack"]
@@ -536,48 +570,50 @@ version = "0.12.3"
 
 [[deps.Parsers]]
 deps = ["Dates", "PrecompileTools", "UUIDs"]
-git-tree-sha1 = "a5aef8d4a6e8d81f171b2bd4be5265b01384c74c"
+git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.5.10"
+version = "2.8.1"
 
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-version = "1.9.2"
+version = "1.10.0"
 
 [[deps.Polynomials]]
-deps = ["LinearAlgebra", "RecipesBase"]
-git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163"
+deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"]
+git-tree-sha1 = "89620a0b5458dca4bf9ea96174fa6422b3adf6f9"
 uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
-version = "3.2.13"
+version = "4.0.8"
 
     [deps.Polynomials.extensions]
     PolynomialsChainRulesCoreExt = "ChainRulesCore"
+    PolynomialsFFTWExt = "FFTW"
     PolynomialsMakieCoreExt = "MakieCore"
     PolynomialsMutableArithmeticsExt = "MutableArithmetics"
 
     [deps.Polynomials.weakdeps]
     ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+    FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
     MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
     MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
 
 [[deps.PooledArrays]]
 deps = ["DataAPI", "Future"]
-git-tree-sha1 = "a6062fe4063cdafe78f4a0a81cfffb89721b30e7"
+git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
 uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
-version = "1.4.2"
+version = "1.4.3"
 
 [[deps.PrecompileTools]]
 deps = ["Preferences"]
-git-tree-sha1 = "259e206946c293698122f63e2b513a7c99a244e8"
+git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f"
 uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
-version = "1.1.1"
+version = "1.2.1"
 
 [[deps.Preferences]]
 deps = ["TOML"]
-git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1"
+git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.4.0"
+version = "1.4.3"
 
 [[deps.PrettyPrint]]
 git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4"
@@ -585,10 +621,10 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98"
 version = "0.2.0"
 
 [[deps.PrettyTables]]
-deps = ["Crayons", "Formatting", "LaTeXStrings", "Markdown", "Reexport", "StringManipulation", "Tables"]
-git-tree-sha1 = "213579618ec1f42dea7dd637a42785a608b1ea9c"
+deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]
+git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660"
 uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
-version = "2.2.4"
+version = "2.3.1"
 
 [[deps.Printf]]
 deps = ["Unicode"]
@@ -596,29 +632,29 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[deps.ProgressMeter]]
 deps = ["Distributed", "Printf"]
-git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9"
+git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad"
 uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
-version = "1.7.2"
+version = "1.10.0"
 
 [[deps.PyCall]]
 deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"]
-git-tree-sha1 = "62f417f6ad727987c755549e9cd88c46578da562"
+git-tree-sha1 = "9816a3826b0ebf49ab4926e2b18842ad8b5c8f04"
 uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
-version = "1.95.1"
+version = "1.96.4"
 
 [[deps.REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[deps.Random]]
-deps = ["SHA", "Serialization"]
+deps = ["SHA"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
 [[deps.Ratios]]
 deps = ["Requires"]
-git-tree-sha1 = "6d7bb727e76147ba18eed998700998e17b8e4911"
+git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b"
 uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439"
-version = "0.4.4"
+version = "0.4.5"
 
     [deps.Ratios.extensions]
     RatiosFixedPointNumbersExt = "FixedPointNumbers"
@@ -661,9 +697,9 @@ version = "0.5.0"
 
 [[deps.SentinelArrays]]
 deps = ["Dates", "Random"]
-git-tree-sha1 = "77d3c4726515dca71f6d80fbb5e251088defe305"
+git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f"
 uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
-version = "1.3.18"
+version = "1.4.1"
 
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@@ -695,30 +731,25 @@ git-tree-sha1 = "4b33e0e081a825dbfaf314decf58fa47e53d6acb"
 uuid = "47aef6b3-ad0c-573a-a1e2-d07658019622"
 version = "1.4.0"
 
-[[deps.SnoopPrecompile]]
-deps = ["Preferences"]
-git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c"
-uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c"
-version = "1.0.3"
-
 [[deps.Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00"
+git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.0"
+version = "1.2.1"
 
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
+version = "1.10.0"
 
 [[deps.SpecialFunctions]]
 deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
-git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880"
+git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "2.2.0"
+version = "2.3.1"
 weakdeps = ["ChainRulesCore"]
 
     [deps.SpecialFunctions.extensions]
@@ -731,26 +762,31 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e"
 version = "0.1.15"
 
 [[deps.StaticArrays]]
-deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
-git-tree-sha1 = "8982b3607a212b070a5e46eea83eb62b4744ae12"
+deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
+git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.5.25"
+version = "1.9.3"
+weakdeps = ["ChainRulesCore", "Statistics"]
+
+    [deps.StaticArrays.extensions]
+    StaticArraysChainRulesCoreExt = "ChainRulesCore"
+    StaticArraysStatisticsExt = "Statistics"
 
 [[deps.StaticArraysCore]]
-git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a"
+git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d"
 uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
-version = "1.4.0"
+version = "1.4.2"
 
 [[deps.Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
-version = "1.9.0"
+version = "1.10.0"
 
 [[deps.StatsAPI]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7"
+git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
 uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.6.0"
+version = "1.7.0"
 
 [[deps.StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
@@ -759,14 +795,15 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 version = "0.33.21"
 
 [[deps.StringManipulation]]
-git-tree-sha1 = "46da2434b41f41ac3594ee9816ce5541c6096123"
+deps = ["PrecompileTools"]
+git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"
 uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
-version = "0.3.0"
+version = "0.3.4"
 
 [[deps.SuiteSparse_jll]]
-deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"]
+deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
 uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
-version = "5.10.1+6"
+version = "7.2.1+1"
 
 [[deps.TOML]]
 deps = ["Dates"]
@@ -780,10 +817,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
 version = "1.0.1"
 
 [[deps.Tables]]
-deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"]
-git-tree-sha1 = "1544b926975372da01227b382066ab70e574a3ec"
+deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.10.1"
+version = "1.11.1"
 
 [[deps.Tar]]
 deps = ["ArgTools", "SHA"]
@@ -795,27 +832,48 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[deps.ToeplitzMatrices]]
-deps = ["AbstractFFTs", "DSP", "LinearAlgebra", "StatsBase"]
-git-tree-sha1 = "5a3eae2c89fbe7c91ca596b961f65bd106167504"
+deps = ["AbstractFFTs", "DSP", "FillArrays", "LinearAlgebra"]
+git-tree-sha1 = "df4e499f6321e72f801aab45336ba76ed06e97db"
 uuid = "c751599d-da0a-543b-9d20-d0a503d91d24"
-version = "0.8.0"
+version = "0.8.3"
+weakdeps = ["StatsBase"]
+
+    [deps.ToeplitzMatrices.extensions]
+    ToeplitzMatricesStatsBaseExt = "StatsBase"
 
 [[deps.TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "71509f04d045ec714c4748c785a59045c3736349"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.7"
+weakdeps = ["Random", "Test"]
+
+    [deps.TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
 
 [[deps.Transducers]]
-deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
-git-tree-sha1 = "25358a5f2384c490e98abd565ed321ffae2cbb37"
+deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"]
+git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af"
 uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999"
-version = "0.4.76"
+version = "0.4.80"
+
+    [deps.Transducers.extensions]
+    TransducersBlockArraysExt = "BlockArrays"
+    TransducersDataFramesExt = "DataFrames"
+    TransducersLazyArraysExt = "LazyArrays"
+    TransducersOnlineStatsBaseExt = "OnlineStatsBase"
+    TransducersReferenceablesExt = "Referenceables"
+
+    [deps.Transducers.weakdeps]
+    BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
+    DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+    LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02"
+    OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338"
+    Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e"
 
 [[deps.URIs]]
-git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a"
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.4.2"
+version = "1.5.1"
 
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
@@ -836,26 +894,32 @@ version = "1.3.0"
 
 [[deps.WoodburyMatrices]]
 deps = ["LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3"
+git-tree-sha1 = "5f24e158cf4cee437052371455fe361f526da062"
 uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6"
-version = "0.5.5"
+version = "0.5.6"
 
 [[deps.Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
-version = "1.2.13+0"
+version = "1.2.13+1"
 
 [[deps.libblastrampoline_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
-version = "5.8.0+0"
+version = "5.8.0+1"
 
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.48.0+0"
+version = "1.52.0+1"
+
+[[deps.oneTBB_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493"
+uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
+version = "2021.12.0+0"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
-version = "17.4.0+0"
+version = "17.4.0+2"
diff --git a/Project.toml b/Project.toml
index dfc9dca..ae3327b 100644
--- a/Project.toml
+++ b/Project.toml
@@ -29,7 +29,7 @@ Distances = "~0.10"
 FFTW = "1.6,1.7"
 FLoops = "~0.2"
 FileIO = "1, 1.8, 1.9"
-Interpolations = "~0.13"
+Interpolations = "~0.13,~0.14,~0.15"
 JLD2 = "~0.4"
 LightGraphs = "1, 1.3"
 NearestNeighbors = "~0.4"
diff --git a/test/creations_test.jl b/test/creations_test.jl
index aa23e6b..f665ff3 100644
--- a/test/creations_test.jl
+++ b/test/creations_test.jl
@@ -9,4 +9,21 @@ y = f.(x)
 @test f.(3,4) == f(5)
 
 y, ψ, res = VortexDistributions.gpecore_exact(1,2,100)
-@test length(y) == 100
\ No newline at end of file
+@test length(y) == 100
+
+# create exact core
+N = 100
+L = 100
+dx = L/N
+x = LinRange(-L / 2, L / 2-dx, N); y = x
+psi0 = one.(x*y') |> complex
+psi = Torus(psi0,x,y)
+
+# make a point vortex
+pv = PointVortex(10.0,10.0,1)
+nv = PointVortex(-10.0,-10.0,-1)
+# make a scalar GPE vortex with exact core
+spv = ScalarVortex(pv)
+snv = ScalarVortex(nv)
+vortex!(psi,spv)
+vortex!(psi,snv)
\ No newline at end of file

From b5cda1566f0a26ada450cdc3108e5ce8c604dc6e Mon Sep 17 00:00:00 2001
From: Ashton Bradley <ashton.bradley@gmail.com>
Date: Tue, 30 Apr 2024 12:14:55 +1200
Subject: [PATCH 2/5] fix types;add core remake script

---
 .github/workflows/CI.yml |   2 +-
 Manifest.toml            |  12 ++-
 src/cores.jld2           | Bin 9568 -> 8734 bytes
 src/create_exact_core.jl | 155 +++++++++++++++++++++++++++++++++++++++
 src/creation.jl          |  28 ++++---
 src/types.jl             |   4 +-
 6 files changed, 180 insertions(+), 21 deletions(-)
 create mode 100644 src/create_exact_core.jl

diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
index 83f9fe4..81eff29 100644
--- a/.github/workflows/CI.yml
+++ b/.github/workflows/CI.yml
@@ -11,7 +11,7 @@ jobs:
       matrix:
         version:
           # - '1.6'
-          - '1.8'
+          - '1.10'
         os:
           - ubuntu-latest
         arch:
diff --git a/Manifest.toml b/Manifest.toml
index a70cd80..6ea9045 100644
--- a/Manifest.toml
+++ b/Manifest.toml
@@ -333,10 +333,16 @@ deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[deps.Interpolations]]
-deps = ["AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
-git-tree-sha1 = "b7bc05649af456efc75d178846f47006c2c4c3c7"
+deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
+git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0"
 uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
-version = "0.13.6"
+version = "0.15.1"
+
+    [deps.Interpolations.extensions]
+    InterpolationsUnitfulExt = "Unitful"
+
+    [deps.Interpolations.weakdeps]
+    Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 
 [[deps.InvertedIndices]]
 git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
diff --git a/src/cores.jld2 b/src/cores.jld2
index da92d9577a089559941d2b6acf3b514beb1f12bb..8ce84fa9e4a20a50d047e3eb691584b24abc017d 100644
GIT binary patch
delta 1116
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diff --git a/src/create_exact_core.jl b/src/create_exact_core.jl
new file mode 100644
index 0000000..62004a6
--- /dev/null
+++ b/src/create_exact_core.jl
@@ -0,0 +1,155 @@
+## upgrade of Interpolations or JLD2 may necessitate rerunning 
+# to rebuild interpolation in new package environment
+# Make this a build script?
+
+using Interpolations, JLD2, LinearAlgebra, ToeplitzMatrices
+Λ = 0.8249
+
+#Chebyshev methods
+function gpecore_exact(K,L=2,N=100,R = K)
+    #currently r does  nothing!
+    #N = 100
+    #L = 2
+    #Κ = 1
+    #R = 2 # Stretching coordinate.  R ~ kappa seems to be a good ballpark
+
+    # Convert Chebyshev grid to [0,L] from [1 -1];
+    z,Dz = getChebDMatrix(N)
+    blank,D2z = getChebD2Matrix(N)
+    z = vec(reverse(z,dims=2))
+    z = (z)*L./2
+    Dz = -2*Dz./L
+    D2z = 4*D2z./L.^2
+
+    # y is the physical coordinate, range [0 infinity] (i.e y = r)
+    y =  @. R*(1+z)/(1-z)
+
+    #initial guess based on ansatz
+    ψ = @. y/hypot(1/Λ,y)
+    ψ[1] = 0
+    ψ[end] = 1
+    ψ0 = vec(ψ)
+
+    Q = vec(z.^2 .- 2*z .+ 1)
+    Qmat = repeat(Q,1,N)
+    Zmat = repeat(2*(z .-1),1,N)
+    Ymat = repeat(1 ./y,1,N);
+
+    # Second Derivative
+    residuals = -0.5*( (Q.*(D2z*ψ) + 2*(z .-1).*(Dz*ψ) ).*Q/(4*R^2)
+            + (Q/(2*R) ./y).*(Dz*ψ) )+ 0.5*K^2 *ψ ./y.^2 + ψ.^3 .- ψ
+    residuals[1] = 0; residuals[end] =0
+
+    while sum(abs.(residuals).^2) > 1e-12
+        # Second Derivative
+        residuals = -0.5*( (Q.*(D2z*ψ) + 2*(z .-1).*(Dz*ψ) ).*Q/(4*R^2)
+                + (Q/(2*R) ./y).*(Dz*ψ) )+ 0.5*K^2 *ψ ./y.^2 + ψ.^3 .- ψ
+        residuals[1] = 0; residuals[end] =0
+
+        Jacobi = -0.5*( (Qmat.*(D2z) + Zmat.*(Dz) ).*(Qmat/(4*R^2))
+        + (Qmat/(2*R).*Ymat).*(Dz) ) + diagm(0 => 0.5*K^2 ./y.^2)+ diagm(0 => 3*ψ.^2 .- 1)
+
+
+        Jacobi[1,:] = [1 zeros(1,N-1)]
+        Jacobi[N,:] = [zeros(1,N-1) 1]
+
+
+        Δ = vec(-4/7*(Jacobi\residuals))
+
+        ψ = ψ + Δ
+        ψ[1] = 0
+        ψ[end] =1
+    end
+    res = norm(residuals)^2
+    return y,ψ,res
+end
+
+"""
+`x, DM =  chebdif(N,M)`
+
+computes the differentiation matrices `D1, D2, ..., DM` on Chebyshev nodes.
+
+Input:
+
+`N`         Size of differentiation matrix.
+
+`M`         Number of derivatives required (integer).
+
+Note      `0 < M <= N-1`.
+
+Output:
+
+DM        `DM(1:N,1:N,ell)` contains ell-th derivative matrix, ell=1..M.
+
+The code implements two strategies for enhanced
+accuracy suggested by W. Don and S. Solomonoff in
+SIAM J. Sci. Comp. Vol. 6, pp. 1253--1268 (1994).
+The two strategies are (a) the use of trigonometric
+identities to avoid the computation of differences
+x(k)-x(j) and (b) the use of the "flipping trick"
+which is necessary since sin t can be computed to high
+relative precision when t is small whereas sin (pi-t) cannot.
+Note added May 2003:  It may, in fact, be slightly better not to
+implement the strategies (a) and (b).   Please consult the following
+paper for details:   "Spectral Differencing with a Twist", by
+R. Baltensperger and M.R. Trummer, to appear in SIAM J. Sci. Comp.
+
+J.A.C. Weideman, S.C. Reddy 1998.  Help notes modified by
+JACW, May 2003."""
+function chebdif(N, M)
+   @assert 0<M<=N-1
+
+   n1,n2 = (floor(N/2)|> Int,ceil(N/2)|> Int)  # Indices used for flipping trick.
+
+   k = collect(0.0:N-1)' # Compute theta vector.
+   th = k*π/(N-1)
+
+   x = sin.(π*collect(N-1:-2:1-N)'./(2*(N-1))) # Compute Chebyshev points.
+
+   T = repeat(th/2,N,1)'
+   DX = 2*sin.(T'.+T).*sin.(T'.-T) # Trigonometric identity.
+   DX = [DX[1:n1,:]; -reverse(reverse(DX[1:n2,:],dims=2),dims=1)] # Flipping trick.
+   DX[diagind(DX)] .= 1 # Put 1's on the main diagonal of DX.
+
+   C = Matrix(Toeplitz((-1).^k',(-1).^k'))  # C is the matrix with
+   C[1,:] = C[1,:]*2; 
+   C[N,:] = C[N,:]*2  # entries c(k)/c(j)
+   C[:,1] = C[:,1]/2; 
+   C[:,N] = C[:,N]/2;
+
+   Z = 1 ./DX  # Z contains entries 1/(x(k)-x(j))
+   Z[diagind(Z)] .= 0  # with zeros on the diagonal.
+
+   D = Matrix{Float64}(I, N, N)  # D contains diff. matrices.
+
+   DM = zeros(N,N,M)
+
+   for ell = 1:M
+       D = ell*Z.*(C.*repeat(diag(D),1,N) - D) # Off-diagonals
+       D[diagind(D)] = -sum(D',dims=1)  # Correct main diagonal of D
+       DM[:,:,ell] = D  # Store current D in DM
+   end
+
+   return x, DM
+end
+
+function getChebDMatrix(n)
+   z, M = chebdif(n, 1)
+   Dz = M[:,:,1]
+   return z, Dz
+end
+
+function getChebD2Matrix(n)
+   z, M = chebdif(n, 2)
+   D2z = M[:,:,2]
+   return z, D2z
+end
+
+y,ψ,res = gpecore_exact(1)
+ψi = interpolate((y,),ψ,Gridded(Linear()))
+
+## ansatz core 
+scalar_ansatz(x) = sqrt(x^2/(1+x^2))
+ψa = interpolate((y,),scalar_ansatz.(y),Gridded(Linear()))
+
+@save joinpath(@__DIR__,"cores.jld2") ψi ψa
\ No newline at end of file
diff --git a/src/creation.jl b/src/creation.jl
index fbdc008..301be66 100644
--- a/src/creation.jl
+++ b/src/creation.jl
@@ -213,22 +213,7 @@ function periodic_dipole!(psi::F,dip::Vector{ScalarVortex{T}}) where {T <: CoreS
     @pack! psi = ψ
 end
 
-
-
-
-# TODO: dispatch on dipole type
-# function periodic_dipole!(psi::F,dip::Dipole) where F <: Field
-#     @unpack ψ,x,y = psi
-#     rp = vortex_array(dip.vp)[1:2]
-#     rn = vortex_array(dip.vn)[1:2]
-#     @. ψ *= abs(dip.vp(x,y')*dip.vn(x,y'))
-#     ψ .*= exp.(im*dipole_phase(x,y,rp...,rn...))
-#     @pack! psi = ψ
-# end
-
-
 #Chebyshev methods
-
 function gpecore_exact(K,L=2,N=100,R = K)
     #currently r does  nothing!
     #N = 100
@@ -367,3 +352,16 @@ function getChebD2Matrix(n)
    D2z = M[:,:,2]
    return z, D2z
 end
+
+
+# TODO: dispatch on dipole type
+# function periodic_dipole!(psi::F,dip::Dipole) where F <: Field
+#     @unpack ψ,x,y = psi
+#     rp = vortex_array(dip.vp)[1:2]
+#     rn = vortex_array(dip.vn)[1:2]
+#     @. ψ *= abs(dip.vp(x,y')*dip.vn(x,y'))
+#     ψ .*= exp.(im*dipole_phase(x,y,rp...,rn...))
+#     @pack! psi = ψ
+# end
+
+
diff --git a/src/types.jl b/src/types.jl
index e1a7014..4bba8f7 100644
--- a/src/types.jl
+++ b/src/types.jl
@@ -46,13 +46,13 @@ mutable struct PointVortex <: Vortex
 end
 
 struct Ansatz <: CoreShape
-    f::Interpolations.GriddedInterpolation{Float64, 1, Float64, Gridded{Linear{Throw{OnGrid}}}, Tuple{Vector{Float64}}}
+    f::Interpolations.GriddedInterpolation{Float64, 1, Vector{Float64}, Gridded{Linear{Throw{OnGrid}}}, Tuple{Vector{Float64}}}
     ξ::Float64
     Λ::Float64
 end
 
 struct Exact <: CoreShape
-    f::Interpolations.GriddedInterpolation{Float64, 1, Float64, Gridded{Linear{Throw{OnGrid}}}, Tuple{Vector{Float64}}}
+    f::Interpolations.GriddedInterpolation{Float64, 1, Vector{Float64}, Gridded{Linear{Throw{OnGrid}}}, Tuple{Vector{Float64}}}
     ξ::Float64
 end
 

From 7e6176039e35ae1d4c7253d400af4fe2d061bbfa Mon Sep 17 00:00:00 2001
From: Ashton Bradley <ashton.bradley@gmail.com>
Date: Tue, 30 Apr 2024 12:21:25 +1200
Subject: [PATCH 3/5] make it 64 bit

---
 .github/workflows/CI.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
index 81eff29..9db0bea 100644
--- a/.github/workflows/CI.yml
+++ b/.github/workflows/CI.yml
@@ -15,8 +15,8 @@ jobs:
         os:
           - ubuntu-latest
         arch:
-          # - x64
-          - x86
+          - x64
+          # - x86
     steps:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1

From 69a02e67f651c5761f124a69d19431acc65b6310 Mon Sep 17 00:00:00 2001
From: Ashton Bradley <ashton.bradley@gmail.com>
Date: Tue, 30 Apr 2024 12:30:44 +1200
Subject: [PATCH 4/5] bump version

---
 Project.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Project.toml b/Project.toml
index ae3327b..f0dfee7 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,7 +1,7 @@
 name = "VortexDistributions"
 uuid = "b688e990-d167-11e8-1f13-43a2532b2fa8"
 authors = ["Ashton Bradley <ashton.bradley@gmail.com>"]
-version = "0.3.5"
+version = "0.3.6"
 
 [deps]
 Coverage = "a2441757-f6aa-5fb2-8edb-039e3f45d037"

From 293757722e1f5c07e02ed0a55577a8c95352b00d Mon Sep 17 00:00:00 2001
From: Ashton Bradley <ashton.bradley@gmail.com>
Date: Tue, 30 Apr 2024 12:33:03 +1200
Subject: [PATCH 5/5] @JuliaRegistrator register()

---
 Manifest.toml | 2 +-
 Project.toml  | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/Manifest.toml b/Manifest.toml
index 6ea9045..b2b551b 100644
--- a/Manifest.toml
+++ b/Manifest.toml
@@ -2,7 +2,7 @@
 
 julia_version = "1.10.2"
 manifest_format = "2.0"
-project_hash = "17bedc7c2c277895f1208abe6a6ac33f8d90dcd2"
+project_hash = "1d8dc06d243a76e86ce69ae348939805867f89ad"
 
 [[deps.AbstractFFTs]]
 deps = ["LinearAlgebra"]
diff --git a/Project.toml b/Project.toml
index f0dfee7..fb1464e 100644
--- a/Project.toml
+++ b/Project.toml
@@ -29,7 +29,7 @@ Distances = "~0.10"
 FFTW = "1.6,1.7"
 FLoops = "~0.2"
 FileIO = "1, 1.8, 1.9"
-Interpolations = "~0.13,~0.14,~0.15"
+Interpolations = "~0.15"
 JLD2 = "~0.4"
 LightGraphs = "1, 1.3"
 NearestNeighbors = "~0.4"
@@ -40,7 +40,7 @@ SimpleWeightedGraphs = "1, 1.1"
 SpecialFunctions = "~1,~2"
 ToeplitzMatrices = "~0.8"
 UnPack = "1"
-julia = "1.7,1.8,1.9"
+julia = "1.9,1.10"
 
 [extras]
 SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"