entity class config for chembl is now hard coded to 'drug' as it may …

…be necessary to use this autocurator when the CHEMBL parser isn't loaded (e.g in OT_MOLECULE)
AstraZeneca · Jul 8, 2024 · a23965b · a23965b
1 parent 2de8145
commit a23965b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/kazu/conf/autocurator/default.yaml b/kazu/conf/autocurator/default.yaml
@@ -29,7 +29,7 @@ chembl:
   _target_: kazu.ontology_preprocessing.autocuration.AutoCurator
   actions:
     - _target_: kazu.ontology_preprocessing.autocuration.SymbolicToCaseSensitiveAction
-      entity_class: ${ontologies.parsers.chembl_parser.entity_class}
+      entity_class: 'drug'
     - _target_: kazu.ontology_preprocessing.autocuration.LikelyAcronym
     - _target_: kazu.ontology_preprocessing.autocuration.IsCommmonWord
       path: ${oc.env:KAZU_MODEL_PACK}/misc/20k_most_common.txt