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bulk-rnaseq.yaml.lock
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bulk-rnaseq.yaml.lock
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tools:
- name: sortmerna
owner: rnateam
revisions:
- 10b84b577117
- eb35257d2e29
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: edger
owner: iuc
revisions:
- 070900306913
- 0cb907a2a810
- 334ce9b1bac5
- 3d89af8a44f0
- 555659de7321
- 5bf899c13979
- 6e53e565fc6a
- a8305cf0c951
- ae2aad0a6d50
- d79ed3ec25fe
- df0c8d0a5992
- f2843df56434
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: limma_voom
owner: iuc
revisions:
- 0921444c832d
- 119b069fc845
- 32511f586472
- 58c35179ebf0
- 708348a17fa1
- d6f5fa4ee473
- e827f9aae031
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: qualimap2_bamqc
owner: refinery-platform
revisions:
- a2438e0f1bbf
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: deseq2
owner: iuc
revisions:
- 0696db066a5b
- 6a3a025714d3
- 71bacea10eee
- 7ff33c2d525b
- 8fe98f7094de
- 9a882d108833
- cd9874cb9019
- d027d1f4984e
- de44f8eff84a
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: kallisto_quant
owner: iuc
revisions:
- 10c98fab6c5a
- 2568a3b975cb
- 40985510cd98
- 4f9c4e6566e5
- 60f888039fb2
- c971db6f0fe5
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: salmon
owner: bgruening
revisions:
- 15cd64d7c58b
- 49121db48873
- 6b0ba6de1424
- 7fdb9d1591e2
- b265be7af3db
- c8903f357804
- cc05793bb896
- e3d32471da11
- ebab418107f5
- f4d5237a84f6
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: cutadapt
owner: lparsons
revisions:
- 093678460093
- 104d86c98776
- 135b80fb1ac2
- 288f97432497
- 44e2cc14f75b
- 48f587c13075
- 4e5056fefd88
- 5915ea1ec9b1
- 5eb7e84243f2
- 64172f1c1202
- 660cffd8d92a
- 8c0175e03cee
- 944ae523bacb
- 9845c649f41b
- aa784cb3810d
- b1c926deaa2d
- c053d4cad713
- c4b82dce8335
- c5e2e5902201
- de6cebe3c043
- e4691e1589d3
- fe74900d6dc7
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: multiqc
owner: iuc
revisions:
- 3d93dd18d9f8
- 5e33b465d8d5
- 75c93c70d094
- 9a913cdee30e
- abfd8a6544d7
- b2f1f75d49c4
- bf675f34b056
- c19b16e5729c
- f7985e0479b9
- f7e2f1eb3a16
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: hisat2
owner: iuc
revisions:
- 0c16cad5e03b
- 26371a1df031
- 3fb01a8c902d
- 61ee47027bd3
- 6c19daec423d
- a86e80d3c09c
- d4b55e2beb12
- f4af63aaf57a
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: tophat2
owner: devteam
revisions:
- 16c4255042be
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: sra_tools
owner: iuc
revisions:
- 1ec814014652
- 248f85ff0733
- 4317d3cb6cba
- 494b2ec08162
- 4df8de2d0e48
- 516a54ddf218
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- 751a694ec620
- 83c7d564b128
- 8848455c0270
- 964579f93c54
- 9a776b080193
- aad3885b3216
- ba931a59dd59
- c441583adae5
- de0f7e0a3896
- e08a7ad4378b
- e407b9da183a
- f5ea3ce9b9b0
- f8054ea1c365
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: rgrnastar
owner: iuc
revisions:
- 3e94726bfa9d
- 3ea5a2a63fa2
- 4014de1b6daf
- 4074fc1940e2
- 44959aa06aeb
- 4df95e2d7f61
- 53255f6eecfc
- 5ec75f5dae3c
- 79de45b5069b
- 7ed2edc1337f
- 850f3679b9b4
- 91e0f03268ca
- 980d2a2e1180
- a2b0feda6933
- b0f2be869d6d
- b9e04854e2bb
- c772497b2c32
- c7c55b694974
- d5659efd66aa
- e132e7d02a3e
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: kallisto_pseudo
owner: iuc
revisions:
- 01247aaf0a10
- 1c75aa5de15e
- 5ae5c312d718
- 87c11c05d238
- a157781cddd7
- ce5d418183c5
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: rmarkdown_wgcna
owner: mingchen0919
revisions:
- 05bcad4b5b4f
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: htseq_count
owner: lparsons
revisions:
- 4418229c501e
- 67b0b160903a
- 7f5a8d427b39
- 916cb26bd9d3
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastqc
owner: devteam
revisions:
- 2c64fded1286
- 3d0c7bdf12f5
- 3e1cdf5406db
- 5ec9f6bceaee
- e7b2202befea
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: featurecounts
owner: iuc
revisions:
- 1b851f87fbe0
- 38b6d12edc68
- 6f66ae7c5f7a
- 7db9d3ea71c9
- 90d16db017d7
- a37612abf7f9
- a56fbe2d6ba7
- ce44c6f2ba38
- ea04b737afa0
- f3a5f075498f
- f9d49f5cb597
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: gtf2gene_list
owner: ebi-gxa
revisions:
- 00ee933b08fd
- 040d4b3a19d5
- 14b3f2a4523b
- 1a642de6db01
- 247b439a78f7
- b6354c917ef9
- b95e6a9bb15c
- e255c0e5dfca
tool_panel_section_label: Util
tool_shed_url: toolshed.g2.bx.psu.edu
- name: text_processing
owner: bgruening
revisions:
- 0a8c6b61f0f4
- 12615d397df7
- 86755160afbf
- 9ff72e942410
- d698c222f354
- ddf54b12c295
- f46f0e4f75c4
- fb4ff3c42cd3
- fbf99087e067
tool_panel_section_label: Util
tool_shed_url: toolshed.g2.bx.psu.edu
- name: rseqc
owner: nilesh
revisions:
- 1421603cc95b
- 1a052c827e88
- 27e16a30667a
- 473382134e56
- 5968573462fa
- dbedfc5f5a3c
- f437057e46f1
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: package_qualimap_2_2
owner: refinery-platform
revisions:
- bcc7b19f86fa
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_quality_filter
owner: devteam
revisions:
- 64e9a6afdd0c
- 7b4468117008
- ce9cd02d5b88
tool_panel_section_label: RNA-Seq
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastx_artifacts_filter
owner: devteam
revisions:
- 529bccd5e4a1
- d5e9e83cd3d8
tool_panel_section_label: FASTA/FASTQ manipulation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bowtie2
owner: devteam
revisions:
- 03e9b2fbc005
- 0d4acadabb04
- cd659e8cc5fa
- d5ceb9f3c25b
- f6877ad76b00
tool_panel_section_label: Mapping
tool_shed_url: toolshed.g2.bx.psu.edu
- name: data_manager_refgenie_pull
owner: blankenberglab
revisions:
- 2cb1863cd236
- b2fa406276e7
tool_panel_section_label: Manage Data
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_trimmer_by_quality
owner: devteam
revisions:
- 8050e091e99b
tool_panel_section_label: FASTA/FASTQ manipulation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_filter_n
owner: ebi-gxa
revisions:
- df87d29fac7f
tool_panel_section_label: FASTA/FASTQ manipulation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_trim_poly_at
owner: ebi-gxa
revisions:
- ebca4912eabe
tool_panel_section_label: FASTA/FASTQ manipulation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: atlas_fastq_provider
owner: ebi-gxa
revisions:
- 22ce1e7f1aaa
tool_panel_section_label: Get Data
tool_shed_url: toolshed.g2.bx.psu.edu
- name: samtools_view
owner: iuc
revisions:
- 0dbf49c414ae
- 2dce91e11ca7
- 32dc5f781059
- 5826298f6a73
- 6be888be75f9
tool_panel_section_label: SAM/BAM
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_quality_trimmer
owner: ebi-gxa
revisions:
- 27e997d5c273
tool_panel_section_label: FASTA/FASTQ manipulation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: fastq_pair
owner: ebi-gxa
revisions:
- 6e13890afaef
tool_panel_section_label: FASTA/FASTQ manipulation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: oncoenrichr
owner: sigven
revisions:
- 023155e2e66c
- dc08c98bb28f
- e88c353e1d66
tool_panel_section_label: Onco Tools
tool_shed_url: toolshed.g2.bx.psu.edu
- name: volcanoplot
owner: iuc
revisions:
- 2f557f6abbfb
- 99ace6c1ff57
- a363ba287b88
- ab01e379d29e
tool_panel_section_label: Graph/Display Data
tool_shed_url: toolshed.g2.bx.psu.edu