diff --git a/Local.md b/Local.md index 3154fb2..362fca1 100644 --- a/Local.md +++ b/Local.md @@ -66,7 +66,7 @@ The tsv file should have at least 2 columns, with the first column indicates sam To perform linear regression on a (simulated) continuous phenotype in our admixed cohort, simply type the following command in your terminal: ``` -python RunTractor.py --hapdose ADMIX_COHORT/ASW.phased --phe PHENO/Phe.txt --method linear --out SumStats.tsv +Rscript run_tractor.R --hapdose ADMIX_COHORT/ASW.phased --phe PHENO/Phe.txt --method linear --out SumStats.tsv ``` This generates our summary statistic output, which has the estimated ancestry-specific p value and effect sizes for each locus for each ancestry. More specifically, you shall see these columns in the summary statistics: