diff --git a/if89.md b/if89.md index b4dc14a..08fcb02 100755 --- a/if89.md +++ b/if89.md @@ -133,6 +133,15 @@ A list of the currently available (`as of 25 Jan 2023`) databases is included be traditional divisions of GenBank, EMBL, and DDBJ. + + Blast + Blast Webpage + 7 Nov 2023 + blast_db/07112023 + nt.*: nucleotide sequence database, with entries from all + traditional divisions of GenBank, EMBL, and DDBJ. + + Alphafold/UniProt foldseek github pages and AlphaFold Protein Structure Database webpage @@ -175,6 +184,22 @@ A list of the currently available (`as of 25 Jan 2023`) databases is included be busco_db/14082023/lineages Lineage datasets for busco tool. Downloaded manually. + + Kaiju + Kaiju Webpage + 26 May 2023 + kaiju/26052023/kaiju_db_rvdb + Kaiju pre-built indexes for protein sequences from RVDB-prot v26.0. Contains the Kaiju .fmi index file, as well as nodes.dmp and names.dmp from the NCBI taxonomy. + + + + Kraken2 + Kraken 2, KrakenUniq and Bracken indexes + 9 Oct 2023 + kraken2/09102023/k2_pluspf + Kraken2 pre-built index for RefSeq database (archaea, bacteria, viral, plasmid, human, protozoa & fungi) plus UniVec_Core. + +