From 90dbe855340c7626f138d2df7eaa9ac5a6017daf Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Tue, 25 Jun 2024 22:57:19 +0000 Subject: [PATCH] Updated the data.yml sourced from australianbiocommons.github.io --- _data/data.yaml | 360 ++++++++++++++++++++++++++++++------------------ 1 file changed, 224 insertions(+), 136 deletions(-) diff --git a/_data/data.yaml b/_data/data.yaml index cbf538b..5dbac09 100644 --- a/_data/data.yaml +++ b/_data/data.yaml @@ -7155,190 +7155,190 @@ - description: 'LAV to BED: Converts a LAV formatted file to BED format' title: LAV to BED 1.0.0 url: https://usegalaxy.org.au/root?tool_id=lav_to_bed1 - - description: 'Convert FASTA to Tabular: ' - title: Convert FASTA to Tabular 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_tabular - - description: 'Convert XTC, DCD, and TRR: ' - title: Convert XTC, DCD, and TRR 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_mdconvert - - description: 'Convert uncompressed file to compressed: ' - title: Convert uncompressed file to compressed 1.16+galaxy0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_uncompressed_to_gz - - description: 'Convert BED to Feature Location Index: ' - title: Convert BED to Feature Location Index 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bed_to_fli_0 - - description: 'Convert Genomic Intervals To Strict BED6: ' - title: Convert Genomic Intervals To Strict BED6 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bed6_0 - - description: 'Convert FASTA to len file: ' - title: Convert FASTA to len file 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_len + - description: 'Convert BAM to coordinate-sorted BAM: ' + title: Convert BAM to coordinate-sorted BAM 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bam_to_coodinate_sorted_bam + - description: 'Convert CML to SMILES: ' + title: Convert CML to SMILES 2.4.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_cml_to_smiles - description: 'OpenBabel converter for molecular formats: ' title: OpenBabel converter for molecular formats 2.4.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_molecules - - description: 'Convert FASTA to Bowtie color space Index: ' - title: Convert FASTA to Bowtie color space Index 1.2.3 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_bowtie_color_index - description: 'Convert compressed file to uncompressed.: ' title: Convert compressed file to uncompressed. 1.0.0 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_gz_to_uncompressed - - description: 'Convert BAM to BigWig: ' - title: Convert BAM to BigWig 1.0.2 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bam_to_bigwig_0 + - description: 'Convert plink pbed to ld reduced format: ' + title: Convert plink pbed to ld reduced format 0.02 + url: https://usegalaxy.org.au/root?tool_id=pbed2ldindepconvert - description: 'Convert Interval to BGZIP: ' title: Convert Interval to BGZIP 1.0.3 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bgzip_0 - - description: 'Convert FASTQ files to seek locations: ' - title: Convert FASTQ files to seek locations 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fastq_to_fqtoc0 - - description: 'Convert BED to GFF: ' - title: Convert BED to GFF 2.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bed_to_gff_0 - - description: 'Convert tabular to dbnsfp: ' - title: Convert tabular to dbnsfp 1.0.2 - url: https://usegalaxy.org.au/root?tool_id=tabular_to_dbnsfp - - description: 'Convert Wiggle to Interval: ' - title: Convert Wiggle to Interval 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_wiggle_to_interval_0 - - description: 'Convert neostore.zip files to neostore: ' - title: Convert neostore.zip files to neostore 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_neostorezip_to_neostore - - description: 'Convert GFF to Interval Index: ' - title: Convert GFF to Interval Index 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_gff_to_interval_index_0 + - description: 'Convert compressed and uncompressed BCF files: ' + title: Convert compressed and uncompressed BCF files 0.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bcf_uncompressed_to_bcf + - description: 'Convert uncompressed file to compressed: ' + title: Convert uncompressed file to compressed 1.16+galaxy0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_uncompressed_to_gz - description: 'Convert tar to directory: ' title: Convert tar to directory 1.0.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_tar_to_directory - - description: 'Convert Interval to tabix: ' - title: Convert Interval to tabix 1.0.2 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_tabix_0 - - description: 'Convert Len file to Linecount: ' - title: Convert Len file to Linecount 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_len_to_linecount + - description: 'Convert FASTA to len file: ' + title: Convert FASTA to len file 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_len + - description: 'Convert Genomic Intervals To BED: ' + title: Convert Genomic Intervals To BED 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bed_0 + - description: 'Convert FASTQ files to seek locations: ' + title: Convert FASTQ files to seek locations 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fastq_to_fqtoc0 + - description: 'Convert SMILES to MOL: ' + title: Convert SMILES to MOL 2.4.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_SMILES_to_MOL - description: 'Convert Genomic Intervals To Strict BED12: ' title: Convert Genomic Intervals To Strict BED12 1.0.0 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bed12_0 - - description: 'Convert Biom datasets: ' - title: Convert Biom datasets 2.1.5 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_biom + - description: 'Convert InChI to MOL: ' + title: Convert InChI to MOL 2.4.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_inchi_to_mol + - description: 'Convert Ref taxonomy to Seq Taxonomy: converts 2 or 3 column sequence + taxonomy file to a 2 column mothur taxonomy_outline format' + title: Convert Ref taxonomy to Seq Taxonomy 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_ref_to_seq_taxomony - description: 'Convert BAM to queryname-sorted BAM: ' title: Convert BAM to queryname-sorted BAM 1.0.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bam_to_qname_sorted_bam - - description: 'Convert compressed file to uncompressed.: ' - title: Convert compressed file to uncompressed. 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bz2_to_uncompressed + - description: 'Convert BigWig to Wiggle: Convert bigWig to wig' + title: Convert BigWig to Wiggle 377+galaxy0 + url: https://usegalaxy.org.au/root?tool_id=bigwigtowig - description: 'Convert FASTA to Bowtie base space Index: ' title: Convert FASTA to Bowtie base space Index 1.3.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_bowtie_base_index + - description: 'Convert Interval to tabix: ' + title: Convert Interval to tabix 1.0.2 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_tabix_0 + - description: 'Convert tabular to CSV: ' + title: Convert tabular to CSV 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=tabular_to_csv - description: 'Convert FASTA to fai file: ' title: Convert FASTA to fai file 1.0.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_fai + - description: 'Convert XTC, DCD, and TRR: ' + title: Convert XTC, DCD, and TRR 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_mdconvert + - description: 'Convert Wiggle to Interval: ' + title: Convert Wiggle to Interval 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_wiggle_to_interval_0 + - description: 'Convert compressed file to uncompressed.: ' + title: Convert compressed file to uncompressed. 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bz2_to_uncompressed + - description: 'Convert GFF to Interval Index: ' + title: Convert GFF to Interval Index 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_gff_to_interval_index_0 + - description: 'Convert BGZ VCF to tabix: ' + title: Convert BGZ VCF to tabix 1.0.2 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_vcf_bgzip_to_tabix_0 + - description: 'Convert plink pbed to linkage lped: ' + title: Convert plink pbed to linkage lped 0.02 + url: https://usegalaxy.org.au/root?tool_id=pbed2lpedconvert + - description: 'Convert neostore.zip files to neostore: ' + title: Convert neostore.zip files to neostore 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_neostorezip_to_neostore - description: 'Convert BED, GFF, or VCF to BigWig: ' title: Convert BED, GFF, or VCF to BigWig 1.0.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bed_gff_or_vcf_to_bigwig_0 - - description: 'Convert tabular to CSV: ' - title: Convert tabular to CSV 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=tabular_to_csv - - description: 'Convert compressed and uncompressed BCF files: ' - title: Convert compressed and uncompressed BCF files 0.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bcf_uncompressed_to_bcf + - description: 'Convert FASTA to Bowtie color space Index: ' + title: Convert FASTA to Bowtie color space Index 1.2.3 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_bowtie_color_index - description: 'Convert MAF to Fasta: ' title: Convert MAF to Fasta 1.0.2 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_maf_to_fasta_0 - - description: 'Convert BGZ VCF to tabix: ' - title: Convert BGZ VCF to tabix 1.0.2 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_vcf_bgzip_to_tabix_0 - - description: 'Convert PDB to GRO: ' - title: Convert PDB to GRO 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_Pdb_to_Gro_0 - - description: 'Convert SMILES to MOL: ' - title: Convert SMILES to MOL 2.4.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_SMILES_to_MOL - - description: 'Convert BAM to coordinate-sorted BAM: ' - title: Convert BAM to coordinate-sorted BAM 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bam_to_coodinate_sorted_bam - - description: 'Convert FASTA to 2bit: ' - title: Convert FASTA to 2bit 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_2bit - - description: 'Convert Parquet to csv: ' - title: Convert Parquet to csv 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_parquet_to_csv - - description: 'Convert BedGraph to BigWig: ' - title: Convert BedGraph to BigWig 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bedgraph_to_bigwig + - description: 'Convert BAM to BigWig: ' + title: Convert BAM to BigWig 1.0.2 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bam_to_bigwig_0 + - description: 'Convert SAM to BigWig: ' + title: Convert SAM to BigWig 1.0.3 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_sam_to_bigwig_0 + - description: 'Convert Genomic Intervals To Strict BED6: ' + title: Convert Genomic Intervals To Strict BED6 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bed6_0 + - description: 'Convert GFF to BED: ' + title: Convert GFF to BED 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_gff_to_bed_0 + - description: 'Convert CRAM to BAM: ' + title: Convert CRAM to BAM 1.0.2 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_cram_to_bam_0 - description: 'Convert GFF to Feature Location Index: ' title: Convert GFF to Feature Location Index 1.0.0 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_gff_to_fli_0 - - description: 'Convert lped to plink pbed: ' - title: Convert lped to plink pbed 0.02 - url: https://usegalaxy.org.au/root?tool_id=lped2pbedconvert + - description: 'SMILES to SMILES: ' + title: SMILES to SMILES 2.4.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_smiles_to_smiles + - description: 'Convert FASTA to 2bit: ' + title: Convert FASTA to 2bit 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_2bit + - description: 'Convert BED to Feature Location Index: ' + title: Convert BED to Feature Location Index 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bed_to_fli_0 + - description: 'Convert Genomic Intervals To Strict BED: ' + title: Convert Genomic Intervals To Strict BED 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bedstrict_0 - description: 'Convert CSV to tabular: ' title: Convert CSV to tabular 1.0.0 url: https://usegalaxy.org.au/root?tool_id=csv_to_tabular + - description: 'Convert Parquet to csv: ' + title: Convert Parquet to csv 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_parquet_to_csv + - description: 'Convert PDB to GRO: ' + title: Convert PDB to GRO 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_Pdb_to_Gro_0 - description: 'Convert Bam to Bai: ' title: Convert Bam to Bai 1.0.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_Bam_Bai_0 - - description: 'Convert MAF to Genomic Intervals: ' - title: Convert MAF to Genomic Intervals 1.0.3 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_maf_to_interval_0 - - description: 'Convert Genomic Intervals To BED: ' - title: Convert Genomic Intervals To BED 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bed_0 - - description: 'Convert MOL2 to MOL: ' - title: Convert MOL2 to MOL 2.4.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_mol2_to_mol - - description: 'Convert SAM to BAM without sorting: ' - title: Convert SAM to BAM without sorting 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_sam_to_unsorted_bam - - description: 'Convert BigWig to Wiggle: Convert bigWig to wig' - title: Convert BigWig to Wiggle 377+galaxy0 - url: https://usegalaxy.org.au/root?tool_id=bigwigtowig - - description: 'Convert plink pbed to linkage lped: ' - title: Convert plink pbed to linkage lped 0.02 - url: https://usegalaxy.org.au/root?tool_id=pbed2lpedconvert - - description: 'Convert GRO to PDB: ' - title: Convert GRO to PDB 1.0.0 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_Gro_to_Pdb_0 + - description: 'Convert Biom datasets: ' + title: Convert Biom datasets 2.1.5 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_biom + - description: 'Convert tabular to dbnsfp: ' + title: Convert tabular to dbnsfp 1.0.2 + url: https://usegalaxy.org.au/root?tool_id=tabular_to_dbnsfp + - description: 'Convert BED to GFF: ' + title: Convert BED to GFF 2.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bed_to_gff_0 + - description: 'Convert BedGraph to BigWig: ' + title: Convert BedGraph to BigWig 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_bedgraph_to_bigwig - description: 'Convert Genomic Intervals To Coverage: ' title: Convert Genomic Intervals To Coverage 1.0.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bigwig_0 - - description: 'Convert CML to SMILES: ' - title: Convert CML to SMILES 2.4.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_cml_to_smiles - - description: 'Convert Genomic Intervals To Strict BED: ' - title: Convert Genomic Intervals To Strict BED 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_interval_to_bedstrict_0 - - description: 'Convert SAM to BigWig: ' - title: Convert SAM to BigWig 1.0.3 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_sam_to_bigwig_0 - description: 'Convert lped to fped: ' title: Convert lped to fped 0.02 url: https://usegalaxy.org.au/root?tool_id=lped2fpedconvert - - description: 'Convert plink pbed to ld reduced format: ' - title: Convert plink pbed to ld reduced format 0.02 - url: https://usegalaxy.org.au/root?tool_id=pbed2ldindepconvert - - description: 'Convert InChI to MOL: ' - title: Convert InChI to MOL 2.4.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_inchi_to_mol - - description: 'Convert Ref taxonomy to Seq Taxonomy: converts 2 or 3 column sequence - taxonomy file to a 2 column mothur taxonomy_outline format' - title: Convert Ref taxonomy to Seq Taxonomy 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_ref_to_seq_taxomony - - description: 'Convert Wiggle to BigWig: ' - title: Convert Wiggle to BigWig 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_wig_to_bigwig - - description: 'SMILES to SMILES: ' - title: SMILES to SMILES 2.4.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_smiles_to_smiles + - description: 'Convert SAM to BAM without sorting: ' + title: Convert SAM to BAM without sorting 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_sam_to_unsorted_bam + - description: 'Convert MAF to Genomic Intervals: ' + title: Convert MAF to Genomic Intervals 1.0.3 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_maf_to_interval_0 + - description: 'Convert MOL2 to MOL: ' + title: Convert MOL2 to MOL 2.4.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_mol2_to_mol - description: 'Convert Picard Interval List to BED6: converter' title: Convert Picard Interval List to BED6 1.0.1 url: https://usegalaxy.org.au/root?tool_id=CONVERTER_picard_interval_list_to_bed6 - - description: 'Convert GFF to BED: ' - title: Convert GFF to BED 1.0.1 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_gff_to_bed_0 - - description: 'Convert CRAM to BAM: ' - title: Convert CRAM to BAM 1.0.2 - url: https://usegalaxy.org.au/root?tool_id=CONVERTER_cram_to_bam_0 + - description: 'Convert Wiggle to BigWig: ' + title: Convert Wiggle to BigWig 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_wig_to_bigwig + - description: 'Convert GRO to PDB: ' + title: Convert GRO to PDB 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_Gro_to_Pdb_0 + - description: 'Convert Len file to Linecount: ' + title: Convert Len file to Linecount 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_len_to_linecount + - description: 'Convert FASTA to Tabular: ' + title: Convert FASTA to Tabular 1.0.1 + url: https://usegalaxy.org.au/root?tool_id=CONVERTER_fasta_to_tabular + - description: 'Convert lped to plink pbed: ' + title: Convert lped to plink pbed 0.02 + url: https://usegalaxy.org.au/root?tool_id=lped2pbedconvert homepage: '' id: Galaxy CONVERTER license: '' @@ -7551,6 +7551,9 @@ edam-outputs: '' edam-topics: '' galaxy: + - description: 'Intersect: the intervals of two datasets' + title: Intersect 1.0.0 + url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fdevteam%2Fintersect%2Fgops_intersect_1%2F1.0.0 - description: 'Gene BED To Exon/Intron/Codon BED: expander' title: Gene BED To Exon/Intron/Codon BED 1.0.0 url: https://usegalaxy.org.au/root?tool_id=gene2exon1 @@ -11974,6 +11977,30 @@ resources: - title: .nan url: .nan +- biocontainers: '' + biotools: '' + bunya: '' + description: '' + edam-inputs: '' + edam-operations: '' + edam-outputs: '' + edam-topics: '' + galaxy: + - description: 'Manipulate Expression Set Object: Manipulate ExpressionSet objects + by a variety of attributes' + title: Manipulate Expression Set Object 0.1.1+galaxy4 + url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fmusic_manipulate_eset%2Fmusic_manipulate_eset%2F0.1.1%2Bgalaxy4 + homepage: '' + id: music_manipulate_eset + license: '' + name: Manipulate Expression Set Object + nci-gadi: '' + nci-if89: '' + pawsey: '' + publications: '' + resources: + - title: .nan + url: .nan - biocontainers: mash biotools: mash bunya: @@ -14597,6 +14624,63 @@ resources: - title: .nan url: .nan +- biocontainers: popmusic + biotools: popmusic + bunya: '' + description: "MuSiC is a suite of programs that evaluate the biophysical effects\ + \ of amino acid mutations in proteins. They request the experimental or modeled\ + \ 3-dimensional protein structure as input, and predict the impact of specific\ + \ single-site mutations requested by the user or of all possible single-site mutations.\n\ + \nPoPMuSiC and HoTMuSiC predict the changes in thermodynamic and thermal stability,\ + \ respectively, upon mutation. They are helpful for the rational design of modified\ + \ proteins with controlled stability properties. \n\nSNPMuSiC predicts whether\ + \ protein variants are deleterious or benign due to stability issues, thus providing\ + \ a molecular-level interpretation of disease phenotype." + edam-inputs: [] + edam-operations: + - Variant effect prediction + - Design + - Protein property calculation + edam-outputs: [] + edam-topics: + - Protein folding, stability and design + - Genetic variation + - Computational biology + - Bioengineering + - Protein properties + galaxy: + - description: 'MuSiC Compare: estimate and compare cell type proportions in multiple + sets of bulk RNA-seq data' + title: MuSiC Compare 0.1.1+galaxy4 + url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Fmusic_compare%2Fmusic_compare%2F0.1.1%2Bgalaxy4 + homepage: http://dezyme.com/ + id: music_compare + license: '' + name: MuSiC Compare + nci-gadi: '' + nci-if89: '' + pawsey: '' + publications: + - title: 'Fast and accurate predictions of protein stability changes upon mutations + using statistical potentials and neural networks: PoPMuSiC-2.0' + url: http://www.ncbi.nlm.nih.gov/pubmed/19654118 + - title: 'PoPMuSiC 2.1: A web server for the estimation of protein stability changes + upon mutation and sequence optimality' + url: http://www.ncbi.nlm.nih.gov/pubmed/21569468 + - title: Quantification of biases in predictions of protein stability changes upon + mutations + url: http://www.ncbi.nlm.nih.gov/pubmed/29718106 + - title: 'Predicting protein thermal stability changes upon point mutations using + statistical potentials: Introducing HoTMuSiC' + url: http://www.ncbi.nlm.nih.gov/pubmed/26988870 + - title: Protein Thermal Stability Engineering Using HoTMuSiC + url: http://www.ncbi.nlm.nih.gov/pubmed/32006278 + - title: Prediction and interpretation of deleterious coding variants in terms of + protein structural stability + url: http://www.ncbi.nlm.nih.gov/pubmed/29540703 + resources: + - title: .nan + url: .nan - biocontainers: '' biotools: '' bunya: '' @@ -21742,6 +21826,10 @@ - RNA-Seq - Transcriptomics galaxy: + - description: 'RNA STARSolo: mapping, demultiplexing and gene quantification for + single cell RNA-seq' + title: RNA STARSolo 2.7.11a+galaxy0 + url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Frna_starsolo%2Frna_starsolo%2F2.7.11a%2Bgalaxy0 - description: 'RNA STAR: Gapped-read mapper for RNA-seq data' title: RNA STAR 2.7.11a+galaxy0 url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Frgrnastar%2Frna_star%2F2.7.11a%2Bgalaxy0