diff --git a/.doctrees/develop/class/class_avogadro_1_1_io_1_1_mdl_format.doctree b/.doctrees/develop/class/class_avogadro_1_1_io_1_1_mdl_format.doctree
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diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
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diff --git a/_images/home_screenshot_1.png b/_images/home_screenshot_1.png
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diff --git a/_static/home_screenshot_1.png b/_static/home_screenshot_1.png
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diff --git a/_static/home_screenshot_2.png b/_static/home_screenshot_2.png
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diff --git a/develop/class/class_avogadro_1_1_io_1_1_mdl_format.html b/develop/class/class_avogadro_1_1_io_1_1_mdl_format.html
index 49278083..83765e96 100644
--- a/develop/class/class_avogadro_1_1_io_1_1_mdl_format.html
+++ b/develop/class/class_avogadro_1_1_io_1_1_mdl_format.html
@@ -526,6 +526,7 @@ <h1>Avogadro::Io::MdlFormat<a class="headerlink" href="#avogadro-io-mdlformat" t
 </dd>
 </dl>
 </p>
+<p>Subclassed by SdfFormat</p>
 <div class="breathe-sectiondef docutils container">
 <p class="breathe-sectiondef-title rubric" id="breathe-section-title-public-functions">Public Functions</p>
 <dl class="cpp function">
@@ -634,6 +635,14 @@ <h1>Avogadro::Io::MdlFormat<a class="headerlink" href="#avogadro-io-mdlformat" t
 </dl>
 </dd></dl>
 
+</div>
+<div class="breathe-sectiondef docutils container">
+<p class="breathe-sectiondef-title rubric" id="breathe-section-title-protected-attributes">Protected Attributes</p>
+<dl class="cpp var">
+<dt class="sig sig-object cpp" id="_CPPv4N8Avogadro2Io9MdlFormat17m_writePropertiesE">
+<span id="_CPPv3N8Avogadro2Io9MdlFormat17m_writePropertiesE"></span><span id="_CPPv2N8Avogadro2Io9MdlFormat17m_writePropertiesE"></span><span id="Avogadro::Io::MdlFormat::m_writeProperties__b"></span><span class="target" id="class_avogadro_1_1_io_1_1_mdl_format_1a3f6f88270a97949a9b8eb0a788978758"></span><span class="kt"><span class="pre">bool</span></span><span class="w"> </span><span class="sig-name descname"><span class="n"><span class="pre">m_writeProperties</span></span></span><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="k"><span class="pre">false</span></span><a class="headerlink" href="#_CPPv4N8Avogadro2Io9MdlFormat17m_writePropertiesE" title="Link to this definition">#</a><br /></dt>
+<dd></dd></dl>
+
 </div>
 </dd></dl>
 
@@ -699,6 +708,7 @@ <h1>Avogadro::Io::MdlFormat<a class="headerlink" href="#avogadro-io-mdlformat" t
 <li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#_CPPv4NK8Avogadro2Io9MdlFormat9mimeTypesEv"><code class="docutils literal notranslate"><span class="pre">MdlFormat::mimeTypes()</span></code></a></li>
 <li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#_CPPv4N8Avogadro2Io9MdlFormat4readERNSt7istreamERN4Core8MoleculeE"><code class="docutils literal notranslate"><span class="pre">MdlFormat::read()</span></code></a></li>
 <li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#_CPPv4N8Avogadro2Io9MdlFormat5writeERNSt7ostreamERKN4Core8MoleculeE"><code class="docutils literal notranslate"><span class="pre">MdlFormat::write()</span></code></a></li>
+<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#_CPPv4N8Avogadro2Io9MdlFormat17m_writePropertiesE"><code class="docutils literal notranslate"><span class="pre">MdlFormat::m_writeProperties</span></code></a></li>
 </ul>
 </li>
 </ul>
diff --git a/genindex.html b/genindex.html
index 01755c0b..163ea81d 100644
--- a/genindex.html
+++ b/genindex.html
@@ -2355,6 +2355,8 @@ <h2 id="A">A</h2>
       <li><a href="develop/class/class_avogadro_1_1_io_1_1_mdl_format.html#_CPPv4NK8Avogadro2Io9MdlFormat14fileExtensionsEv">Avogadro::Io::MdlFormat::fileExtensions (C++ function)</a>
 </li>
       <li><a href="develop/class/class_avogadro_1_1_io_1_1_mdl_format.html#_CPPv4NK8Avogadro2Io9MdlFormat10identifierEv">Avogadro::Io::MdlFormat::identifier (C++ function)</a>
+</li>
+      <li><a href="develop/class/class_avogadro_1_1_io_1_1_mdl_format.html#_CPPv4N8Avogadro2Io9MdlFormat17m_writePropertiesE">Avogadro::Io::MdlFormat::m_writeProperties (C++ member)</a>
 </li>
       <li><a href="develop/class/class_avogadro_1_1_io_1_1_mdl_format.html#_CPPv4N8Avogadro2Io9MdlFormat9MdlFormatEv">Avogadro::Io::MdlFormat::MdlFormat (C++ function)</a>
 </li>
@@ -2865,11 +2867,11 @@ <h2 id="A">A</h2>
       <li><a href="develop/class/class_avogadro_1_1_qt_gui_1_1_container_widget.html#_CPPv4N8Avogadro5QtGui15ContainerWidget9closeViewEv">Avogadro::QtGui::ContainerWidget::closeView (C++ function)</a>
 </li>
       <li><a href="develop/class/class_avogadro_1_1_qt_gui_1_1_container_widget.html#_CPPv4N8Avogadro5QtGui15ContainerWidget15ContainerWidgetEP7QWidgetN2Qt11WindowFlagsE">Avogadro::QtGui::ContainerWidget::ContainerWidget (C++ function)</a>
-</li>
-      <li><a href="develop/class/class_avogadro_1_1_qt_gui_1_1_container_widget.html#_CPPv4NK8Avogadro5QtGui15ContainerWidget8isActiveEv">Avogadro::QtGui::ContainerWidget::isActive (C++ function)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="develop/class/class_avogadro_1_1_qt_gui_1_1_container_widget.html#_CPPv4NK8Avogadro5QtGui15ContainerWidget8isActiveEv">Avogadro::QtGui::ContainerWidget::isActive (C++ function)</a>
+</li>
       <li><a href="develop/class/class_avogadro_1_1_qt_gui_1_1_container_widget.html#_CPPv4N8Avogadro5QtGui15ContainerWidget9setActiveEb">Avogadro::QtGui::ContainerWidget::setActive (C++ function)</a>
 </li>
       <li><a href="develop/class/class_avogadro_1_1_qt_gui_1_1_container_widget.html#_CPPv4N8Avogadro5QtGui15ContainerWidget13setViewWidgetEP7QWidget">Avogadro::QtGui::ContainerWidget::setViewWidget (C++ function)</a>
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index b092bce6..7549426d 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/searchindex.js b/searchindex.js
index b6dac627..0a6b558a 100644
--- a/searchindex.js
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@@ -1 +1 @@
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296], "yz": 40, "z": [22, 25, 31, 173, 177, 186, 190, 195, 196, 211, 219, 221, 225, 242, 244, 249, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 291], "z2": 40, "zackari": 4, "zaitsef": 300, "zaryob": 291, "zero": [2, 4, 24, 26, 31, 65, 82, 85, 98, 121, 173, 177, 180, 244, 296], "zeta": 40, "zfar": 121, "zhang": 296, "zhu": [2, 4], "zirconium": 292, "zlib": 9, "zlib1g": 9, "zmax": 161, "zmin": 161, "znear": 121, "zoom": [121, 215, 251, 268, 294, 298], "zulfikar": [2, 4], "zypper": 9, "\u00e5": [186, 190, 191, 192, 227, 246, 250, 264, 306, 309, 310], "\u00e53": 191, "\u00f6mer": [2, 4], "\u010dert\u00edk": [2, 4], "\u03b1": [211, 305], "\u03b2": [211, 305], "\u03b3": 305, "\u03b7": 254, "\u043c\u0430\u043d69\u043a": 295, "\u5218\u97ec": 294}, "titles": ["Contributing Code", "Coding Style (C++)", "&lt;no title&gt;", "Coding Conventions (C++)", "Thanks", "Documenting Code", "Contribute", "Translations", "Avogadro App", "Building Source Code", "Avogadro::Core::Array", "Avogadro::Core::ArraySet", "Avogadro::Core::ArraySet::Holder", "Avogadro::Core::ArraySet::PlaceHolder", "Avogadro::Core::Atom", "Avogadro::Core::AtomTemplate", "Avogadro::Core::AtomTyper", "Avogadro::Core::AvoSpglib", "Avogadro::Core::BasisSet", "Avogadro::Core::Bond", "Avogadro::Core::BondTemplate", "Avogadro::Core::Color3f", "Avogadro::Core::CoordinateBlockGenerator", "Avogadro::Core::CoordinateSet", "Avogadro::Core::CrystalTools", "Avogadro::Core::Cube", "Avogadro::Core::Elements", "Avogadro::Core::GaussianSet", "Avogadro::Core::GaussianSetTools", "Avogadro::Core::Graph", "Avogadro::Core::Mesh", "Avogadro::Core::Molecule", "Avogadro::Core::MoleculeDeserializer", "Avogadro::Core::MoleculeSerializer", "Avogadro::Core::Mutex", "Avogadro::Core::NameAtomTyper", "Avogadro::Core::Residue", "Avogadro::Core::ResidueData", "Avogadro::Core::RingPerceiver", "Avogadro::Core::SharedMutex", "Avogadro::Core::SlaterSet", "Avogadro::Core::SlaterSetTools", "Avogadro::Core::SpaceGroups", "Avogadro::Core::SymbolAtomTyper", "Avogadro::Core::UnitCell", "Avogadro::Core::Variant", "Avogadro::Core::VariantMap", "Avogadro::Core::internal::ArrayRefContainer", "Avogadro::Io::CjsonFormat", "Avogadro::Io::CmlFormat", "Avogadro::Io::DcdFormat", "Avogadro::Io::FileFormat", "Avogadro::Io::FileFormatManager", "Avogadro::Io::GromacsFormat", "Avogadro::Io::Hdf5DataFormat", "Avogadro::Io::LammpsDataFormat", "Avogadro::Io::LammpsTrajectoryFormat", "Avogadro::Io::MMTFFormat", "Avogadro::Io::MdlFormat", "Avogadro::Io::OutcarFormat", "Avogadro::Io::PdbFormat", "Avogadro::Io::PoscarFormat", "Avogadro::Io::TrrFormat", "Avogadro::Io::XyzFormat", "Avogadro::MoleQueue::BatchJob", "Avogadro::MoleQueue::InputGenerator", "Avogadro::MoleQueue::InputGeneratorDialog", "Avogadro::MoleQueue::InputGeneratorWidget", "Avogadro::MoleQueue::MoleQueueDialog", "Avogadro::MoleQueue::MoleQueueManager", "Avogadro::MoleQueue::MoleQueueQueueListModel", "Avogadro::MoleQueue::MoleQueueWidget", "Avogadro::QtGui::BackgroundFileFormat", "Avogadro::QtGui::ContainerWidget", "Avogadro::QtGui::CustomElementDialog", "Avogadro::QtGui::ElementDetail", "Avogadro::QtGui::ElementItem", "Avogadro::QtGui::ElementTranslator", "Avogadro::QtGui::ExtensionPlugin", "Avogadro::QtGui::ExtensionPluginFactory", "Avogadro::QtGui::FileBrowseWidget", "Avogadro::QtGui::FileFormatDialog", "Avogadro::QtGui::GenericHighlighter", "Avogadro::QtGui::GenericHighlighter::Rule", "Avogadro::QtGui::HydrogenTools", "Avogadro::QtGui::InterfaceScript", "Avogadro::QtGui::InterfaceWidget", "Avogadro::QtGui::MeshGenerator", "Avogadro::QtGui::Molecule", "Avogadro::QtGui::MoleculeModel", "Avogadro::QtGui::MultiViewWidget", "Avogadro::QtGui::PeriodicTableScene", "Avogadro::QtGui::PeriodicTableView", "Avogadro::QtGui::PersistentAtom", "Avogadro::QtGui::PersistentBond", "Avogadro::QtGui::PythonScript", "Avogadro::QtGui::RWAtom", "Avogadro::QtGui::RWBond", "Avogadro::QtGui::RWMolecule", "Avogadro::QtGui::ScenePlugin", "Avogadro::QtGui::ScenePluginFactory", "Avogadro::QtGui::ScenePluginModel", "Avogadro::QtGui::ScriptLoader", "Avogadro::QtGui::ToolPlugin", "Avogadro::QtGui::ToolPluginFactory", "Avogadro::QtGui::ViewFactory", "Avogadro::QtOpenGL::ActiveObjects", "Avogadro::QtOpenGL::GLWidget", "Avogadro::QtOpenGL::QtTextRenderStrategy", "Avogadro::QuantumIO::GAMESSUSOutput", "Avogadro::QuantumIO::GUKBasisSet", "Avogadro::QuantumIO::GamessukOut", "Avogadro::QuantumIO::GaussianCube", "Avogadro::QuantumIO::GaussianFchk", "Avogadro::QuantumIO::MoldenFile", "Avogadro::QuantumIO::MopacAux", "Avogadro::QuantumIO::NWChemJson", "Avogadro::QuantumIO::NWChemLog", "Avogadro::Rendering::AmbientOcclusionSphereGeometry", "Avogadro::Rendering::ArrowGeometry", "Avogadro::Rendering::BufferObject", "Avogadro::Rendering::Camera", "Avogadro::Rendering::Cylinder", "Avogadro::Rendering::CylinderGeometry", "Avogadro::Rendering::Drawable", "Avogadro::Rendering::GLRenderVisitor", "Avogadro::Rendering::GLRenderer", "Avogadro::Rendering::GeometryNode", "Avogadro::Rendering::GeometryVisitor", "Avogadro::Rendering::GroupNode", "Avogadro::Rendering::LineStripGeometry", "Avogadro::Rendering::MeshGeometry", "Avogadro::Rendering::Node", "Avogadro::Rendering::POVRayVisitor", "Avogadro::Rendering::Primitive", "Avogadro::Rendering::Scene", "Avogadro::Rendering::Shader", "Avogadro::Rendering::ShaderProgram", "Avogadro::Rendering::Sphere", "Avogadro::Rendering::SphereGeometry", "Avogadro::Rendering::TextLabel2D", "Avogadro::Rendering::TextLabel3D", "Avogadro::Rendering::TextLabelBase", "Avogadro::Rendering::TextProperties", "Avogadro::Rendering::TextRenderStrategy", "Avogadro::Rendering::Texture2D", "Avogadro::Rendering::TransformNode", "Avogadro::Rendering::VRMLVisitor", "Avogadro::Rendering::Visitor", "Avogadro::Rendering::VolumeGeometry", "Avogadro::TypeTraits", "Avogadro::TypeTraits&lt; char &gt;", "Avogadro::TypeTraits&lt; double 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"Building Materials", "Building Molecule-Surface Interactions", "Reducing Crystals to a Primitive Unit Cell", "Scaling Crystal Cell Volume", "Building a Supercell", "Building a Peptide", "Building Carbon Nanotubes", "Building DNA or RNA", "Building with SMILES", "Importing from the Protein Data Bank (PDB)", "Importing Molecules by Name", "Building Molecules", "Insert Molecular Fragments", "&lt;no title&gt;", "&lt;no title&gt;", "&lt;no title&gt;", "&lt;no title&gt;", "&lt;no title&gt;", "&lt;no title&gt;", "&lt;no title&gt;", "Coloring Part of a Molecules", "Display Types", "Different Display Styles", "Extensions", "Drawing Molecules", "Getting Started", "Introduction", "Making Selections", "Saving Files", "Guide", "Build Menu", "Edit Menu", "Extensions Menu", "File Menu", "Menus", "Select Menu", "View Menu", "Finding Conformers of Molecules", "Geometry Constraints", "Enabling additional force fields", "Optimizing Geometry", "Introduction to Molecular Mechanics", "&lt;no title&gt;", 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\ No newline at end of file