From 76b073cd2e6aa77913b567913cb26eb3727c7dc6 Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Tue, 27 Sep 2022 23:34:46 -0700 Subject: [PATCH] Add more no_value_flags for routine-assembly --- auto_cpo/core.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/auto_cpo/core.py b/auto_cpo/core.py index f0959d9..c29471f 100644 --- a/auto_cpo/core.py +++ b/auto_cpo/core.py @@ -122,7 +122,7 @@ def analyze_run(config: dict[str, object], analysis: dict[str, object]): base_analysis_work_dir = config['analysis_work_dir'] no_value_flags_by_pipeline_name = { "BCCDC-PHL/taxon-abundance": [], - "BCCDC-PHL/routine-assembly": ["unicycler", "hybrid", "bakta", "prokka"], + "BCCDC-PHL/routine-assembly": ["unicycler", "shovill", "dragonflye", "hybrid", "bakta", "prokka"], "BCCDC-PHL/mlst-nf": [], "BCCDC-PHL/plasmid-screen": ["pre_assembled"], }