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Add unzip to toil workers and git to toil leader #134

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Jeltje opened this issue Mar 21, 2016 · 4 comments
Open

Add unzip to toil workers and git to toil leader #134

Jeltje opened this issue Mar 21, 2016 · 4 comments
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@Jeltje
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Jeltje commented Mar 21, 2016

To allow git clone toil-scripts and to be able to run rnaseq pipelines, which require unzip but don't check for it.

@hannes-ucsc hannes-ucsc self-assigned this Mar 21, 2016
@hannes-ucsc hannes-ucsc changed the title add unzip to toil workers and git to toil leader Add unzip to toil workers and git to toil leader Mar 21, 2016
@hannes-ucsc
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Ok with unzip. But git pulls in a rats tail of other stuff. Is there any way we can avoid git?

@Jeltje
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Jeltje commented Mar 23, 2016

Actually unzip is no longer needed. Git is apparently the new way to get the toil-scripts, so maybe there's another way to pull those in?

@hannes-ucsc
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How about cloning toil-scripts on the head node and rsyncing it over to the leader?

@Jeltje
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Jeltje commented Mar 23, 2016

I'm just following John's instructions after finding myself unable to rsync a single script (the way we used to). It's all fine with me, but it would be good to agree on something and add the preferred method to the toil-script README.

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