version.xml

<package name='CodonSubstModels' version="2.0.0">
        <depends on='BEAST.base' atleast='2.7.2'/>
        <depends on='BEAST.app' atleast='2.7.2'/>

    <service type="beast.base.core.BEASTInterface">
        <provider classname="codonmodels.app.beauti.CodonAlignmentProvider"/>
        <provider classname="codonmodels.ApproximateSubstModel"/>
        <provider classname="codonmodels.ApproxP_dist_CubicSpline"/>
        <provider classname="codonmodels.ApproxP_dist_Piecewise"/>
        <provider classname="codonmodels.ApproxP_dist_Polynomial"/>
        <provider classname="codonmodels.CodonFrequencies"/>
        <provider classname="codonmodels.CodonSubstitutionModel"/>
        <provider classname="codonmodels.evolution.alignment.CodonAlignment"/>
        <provider classname="codonmodels.evolution.alignment.CodonAlignmentFromAminoAcids"/>
        <provider classname="codonmodels.evolution.alignment.SimulatedCodonAlignment"/>
        <provider classname="codonmodels.evolution.datatype.Codon"/>
        <provider classname="codonmodels.evolution.datatype.GeneticCode"/>
        <provider classname="codonmodels.evolution.likelihood.DataAugTreeLikelihood"/>
        <provider classname="codonmodels.evolution.likelihood.GenericDATreeLikelihood"/>
<!--        <provider classname="codonmodels.evolution.operators.GibbsSampler"/>-->
        <provider classname="codonmodels.evolution.operators.GibbsSamplingOperator"/>
        <provider classname="codonmodels.evolution.operators.ScaleOperatorGibbs"/>
        <provider classname="codonmodels.evolution.operators.UniformGibbs"/>
        <provider classname="codonmodels.evolution.tree.NodeStatesArray"/>
        <provider classname="codonmodels.evolution.tree.NodeStatesLogger"/>
        <provider classname="codonmodels.util.Report"/>
        <provider classname="codonmodels.ApproximateSubstModel"/>
        <provider classname="codonmodels.ApproxP_dist_CubicSpline"/>
        <provider classname="codonmodels.ApproxP_dist_Piecewise"/>
        <provider classname="codonmodels.ApproxP_dist_Polynomial"/>
        <provider classname="codonmodels.CodonFrequencies"/>
        <provider classname="codonmodels.CodonSubstitutionModel"/>
        <provider classname="codonmodels.M0Model"/>
        <provider classname="codonmodels.GeneralCodonFrequencies"/>
        <provider classname="codonmodels.GeneralCodonSubstitutionModel"/>
        <provider classname="codonmodels.EmpiricalCodonModel"/>
        <provider classname="codonmodels.EmpiricalAACodonModel"/>
    </service>

    <service type="beast.base.evolution.datatype.DataType">
        <provider classname="codonmodels.evolution.datatype.Codon"/>
    </service>

    <service type="beastfx.app.inputeditor.InputEditor">
        <provider classname="codonmodels.app.beauti.CodonFrequenciesInputEditor"/>
    </service>


</package>