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Young Chan
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@@ -110,7 +110,7 @@ SOAPnuke Change Log | |
* 修复了Adapter过滤的bug | ||
* 添加了污染物过滤功能 | ||
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2018-8-17 <chenyuxin@genomics.cn> | ||
2018-8-17 <gongchun@genomics.cn> | ||
* 版本升级为2.0 beta | ||
* 保留了之前的filter,filterMeta和filtersRNA模块,删除了filterDGE模块,如有需求,后续添加。 | ||
* 统一了模块间的运行逻辑,除了adapter检测部分的算法差异,其它类似。主要步骤包括统计原始数据,过滤原始数据,统计过滤后的原始数据。 | ||
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@@ -121,13 +121,41 @@ SOAPnuke Change Log | |
* 去除了rmdup去重复功能 | ||
* 当增加线程数时,运行效率得到显著提升。1.3G reads(PE50)在非ssd模式16线程下运行时间为70min左右 | ||
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2018-12-1 <chenyuxin@genomics.cn> | ||
2018-12-1 <gongchun@genomics.cn> | ||
* 版本升级为2.0.1 | ||
* 修正了若干Bug | ||
* 修改了过滤后fastq文件的split模块 | ||
* 放宽了adapter检测条件 | ||
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2018-12-26 <chenyuxin@genomics.cn> | ||
2018-12-26 <gongchun@genomics.cn> | ||
* 版本升级为2.0.2 | ||
* 保证了多线程输出结果的顺序一致 | ||
* 降低内存和提升速度 | ||
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2019-1-10 <[email protected]> | ||
* 版本升级为2.0.3 | ||
* SE trimming 和 fov 过滤部分的debug | ||
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2019-2-1 <[email protected]> | ||
* 版本升级为2.0.5 | ||
* 增加对过滤后数据提取的功能 | ||
* 修复程序在读取数据被打断或读取过多内容时引发的bug | ||
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2019-3-31 <[email protected]> | ||
* 版本升级为2.0.6 | ||
* 修复了不稳定输出的bug | ||
* 优化了全局污染物匹配算法 | ||
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2019-5-17 <[email protected]> | ||
* 版本升级为2.0.7 | ||
* 修复了在MaxOS上运行引发的bug,以及其他bug | ||
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2019-6-28 <[email protected]> | ||
* 版本升级为2.0.8 | ||
* 升级了README的内容,以顺应2.X的版本 | ||
* 优化了fov的匹配算法 | ||
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2019-7-24 <[email protected]> | ||
* 版本升级为2.1.0 | ||
* 将输出顺序改为输入文件中的reads顺序,显著提升了split功能速度 | ||
* 增强了随机提取reads数目的随机性 |