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error during make install while trying to install on new macbook #170

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lgazdzin opened this issue Feb 6, 2025 · 0 comments
Open

error during make install while trying to install on new macbook #170

lgazdzin opened this issue Feb 6, 2025 · 0 comments

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@lgazdzin
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lgazdzin commented Feb 6, 2025

Hi,

I'm running into the following error while trying to install minc-toolkit-v2 on my new macbook (M2).

minc-toolkit-v2-build/HDF5/src/H5Fsuper.c:1397:16: error: call to undeclared function 'H5O__fsinfo_set_version'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
1397 | if(H5O__fsinfo_set_version(f, &fsinfo) < 0)
| ^
1 error generated.
make[5]: *** [src/CMakeFiles/hdf5-static.dir/H5Fsuper.c.o] Error 1
make[4]: *** [src/CMakeFiles/hdf5-static.dir/all] Error 2
make[3]: *** [all] Error 2
make[2]: *** [HDF5-prefix/src/HDF5-stamp/HDF5-build] Error 2
make[1]: *** [CMakeFiles/HDF5.dir/all] Error 2
make: *** [all] Error 2

My cmake call is this:

cmake ../minc-toolkit-v2/ -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_PREFIX:PATH=/opt/minc/1.9.18 -DMT_BUILD_ABC:BOOL=ON -DMT_BUILD_ANTS:BOOL=ON -DMT_BUILD_C3D:BOOL=ON -DMT_BUILD_ELASTIX:BOOL=ON -DMT_BUILD_IM:BOOL=OFF -DMT_BUILD_ITK_TOOLS:BOOL=ON -DMT_BUILD_LITE:BOOL=OFF -DMT_BUILD_SHARED_LIBS:BOOL=ON -DMT_BUILD_VISUAL_TOOLS:BOOL=ON -DMT_USE_OPENMP:BOOL=ON -DUSE_SYSTEM_FFTW3D:BOOL=OFF -DUSE_SYSTEM_FFTW3F:BOOL=OFF -DUSE_SYSTEM_GLUT:BOOL=OFF -DUSE_SYSTEM_GSL:BOOL=ON -DUSE_SYSTEM_HDF5:BOOL=OFF -DUSE_SYSTEM_ITK:BOOL=OFF -DUSE_SYSTEM_NETCDF:BOOL=OFF -DUSE_SYSTEM_NIFTI:BOOL=OFF -DUSE_SYSTEM_PCRE:BOOL=OFF -DUSE_SYSTEM_ZLIB:BOOL=OFF -DBISON_EXECUTABLE=/usr/local/opt/bison/bin/bison -DHDF5_ROOT=$(brew --prefix hdf5)

The HDF5 version that I think it's using is 1.14.5 (I've tried the above command with -DUSE_SYSTEM_HDF5:BOOL=ON as well, but this didn't help.

Thanks!

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