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benchmarks.yml
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improve decoding function; decode all output layers; convert to data … .github/workflows/benchmarks.yml #144: Commit 221961b pushed by borauyar
April 3, 2024 10:07 6m 7s main
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April 3, 2024 10:07 6m 7s
fix bug; decoder needs to be concerned with output/target layers .github/workflows/benchmarks.yml #143: Commit 357fada pushed by borauyar
April 3, 2024 09:47 6m 11s main
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April 3, 2024 09:47 6m 11s
Merge pull request #72 from BIMSBbioinfo/71-regulate-hpo-configs-acco… .github/workflows/benchmarks.yml #142: Commit 1197618 pushed by borauyar
April 2, 2024 13:11 8m 30s main
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April 2, 2024 13:11 8m 30s
dont store dataset in model .github/workflows/benchmarks.yml #141: Commit 33df51f pushed by borauyar
March 25, 2024 17:34 8m 44s main
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March 25, 2024 17:34 8m 44s
Merge pull request #70 from BIMSBbioinfo/69-move-dataset-objects-outs… .github/workflows/benchmarks.yml #140: Commit cdbea1b pushed by borauyar
March 25, 2024 17:10 8m 11s main
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March 25, 2024 17:10 8m 11s
improve handling of label types .github/workflows/benchmarks.yml #139: Commit 8a20130 pushed by borauyar
March 20, 2024 12:44 7m 56s main
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March 20, 2024 12:44 7m 56s
Merge pull request #68 from BIMSBbioinfo/cross_modal_pred .github/workflows/benchmarks.yml #138: Commit e0f200c pushed by borauyar
March 17, 2024 12:51 7m 42s main
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March 17, 2024 12:51 7m 42s
use prefix for download processed folder for graph data .github/workflows/benchmarks.yml #137: Commit ec49614 pushed by borauyar
March 15, 2024 10:40 6m 55s main
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March 15, 2024 10:40 6m 55s
pass threads to baseline evaluation tools .github/workflows/benchmarks.yml #136: Commit c854c70 pushed by borauyar
March 14, 2024 11:26 6m 50s main
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March 14, 2024 11:26 6m 50s
use scipy.stats approach to compute r and r2 values .github/workflows/benchmarks.yml #135: Commit 7062c97 pushed by borauyar
March 13, 2024 11:58 6m 50s main
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March 13, 2024 11:58 6m 50s
export openblas variable to avoid threading clash .github/workflows/benchmarks.yml #134: Commit ee7d586 pushed by borauyar
March 13, 2024 10:22 7m 0s main
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March 13, 2024 10:22 7m 0s
Fix processing cold graph data for GNNs (#65) .github/workflows/benchmarks.yml #133: Commit 9085d0d pushed by trsvchn
March 9, 2024 16:00 7m 18s main
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March 9, 2024 16:00 7m 18s
Implement new on-Disk PYG MultiOmics Dataset class (#64) .github/workflows/benchmarks.yml #132: Commit a6887d3 pushed by trsvchn
March 9, 2024 15:37 6m 4s main
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March 9, 2024 15:37 6m 4s
fix bug: gcnn didnt pick up surv variables .github/workflows/benchmarks.yml #131: Commit 32bae40 pushed by borauyar
March 6, 2024 12:16 6m 30s main
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March 6, 2024 12:16 6m 30s
add Cbioportal class to download/process data from cbioportal .github/workflows/benchmarks.yml #130: Commit ebbaaaa pushed by borauyar
March 5, 2024 21:28 6m 59s main
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March 5, 2024 21:28 6m 59s
revert back to using conda to manage envs .github/workflows/benchmarks.yml #129: Commit 3e0b9a5 pushed by borauyar
March 5, 2024 12:08 8m 54s main
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March 5, 2024 12:08 8m 54s
update requirements .github/workflows/benchmarks.yml #128: Commit 002da7c pushed by borauyar
March 5, 2024 12:05 8m 35s main
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March 5, 2024 12:05 8m 35s
Fix default for non-GNN model (#62) .github/workflows/benchmarks.yml #127: Commit e562606 pushed by trsvchn
March 5, 2024 02:19 7m 51s main
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March 5, 2024 02:19 7m 51s
Decouple Stringdb from data import (#61) .github/workflows/benchmarks.yml #126: Commit 7f0163a pushed by trsvchn
March 5, 2024 01:55 5m 26s main
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March 5, 2024 01:55 5m 26s
condition no longer needed .github/workflows/benchmarks.yml #125: Commit 313ebd2 pushed by borauyar
March 4, 2024 19:03 9m 59s main
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March 4, 2024 19:03 9m 59s
import GNNs instead of GCNN .github/workflows/benchmarks.yml #124: Commit 64686fd pushed by borauyar
March 4, 2024 18:19 7m 50s main
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March 4, 2024 18:19 7m 50s
fall back to GCNN by default .github/workflows/benchmarks.yml #123: Commit df78438 pushed by borauyar
March 4, 2024 15:32 5m 2s main
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March 4, 2024 15:32 5m 2s
Merge pull request #60 from BIMSBbioinfo/gnn_dev .github/workflows/benchmarks.yml #122: Commit c0ebf36 pushed by borauyar
March 4, 2024 15:26 5m 24s main
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March 4, 2024 15:26 5m 24s
fix issue with path to env .github/workflows/benchmarks.yml #121: Commit f59f86e pushed by borauyar
March 2, 2024 14:48 7m 26s main
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March 2, 2024 14:48 7m 26s
cache the env .github/workflows/benchmarks.yml #120: Commit 586d3ec pushed by borauyar
March 2, 2024 14:32 5m 24s main
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March 2, 2024 14:32 5m 24s