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benchmarks.yml
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replace conda with python venv .github/workflows/benchmarks.yml #119: Commit 436f93f pushed by borauyar
March 2, 2024 14:23 7m 45s main
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March 2, 2024 14:23 7m 45s
use python venv instead of conda in the workflow .github/workflows/benchmarks.yml #118: Commit d6e5a04 pushed by borauyar
March 2, 2024 13:58 15m 39s main
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March 2, 2024 13:58 15m 39s
Merge pull request #59 from BIMSBbioinfo/testgpu .github/workflows/benchmarks.yml #117: Commit adf4dcc pushed by borauyar
March 2, 2024 13:02 7m 19s main
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March 2, 2024 13:02 7m 19s
add unsupervised training tutorial under GHA .github/workflows/benchmarks.yml #116: Commit 6e9b7cb pushed by borauyar
March 1, 2024 16:21 6m 16s main
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March 1, 2024 16:21 6m 16s
use seed_everything only once in main.py .github/workflows/benchmarks.yml #115: Commit 6d260c6 pushed by borauyar
March 1, 2024 12:26 7m 0s main
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March 1, 2024 12:26 7m 0s
Merge pull request #58 from BIMSBbioinfo/gnn-surv .github/workflows/benchmarks.yml #114: Commit 4c0a58e pushed by borauyar
March 1, 2024 08:35 6m 5s main
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March 1, 2024 08:35 6m 5s
add functions for clustering utilities, update dependencies .github/workflows/benchmarks.yml #113: Commit 2b5e415 pushed by borauyar
February 29, 2024 21:47 4m 56s main
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February 29, 2024 21:47 4m 56s
use random survival forests to evaluate off-the-shelf method performa… .github/workflows/benchmarks.yml #112: Commit 230f30c pushed by borauyar
February 29, 2024 13:37 10m 8s main
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February 29, 2024 13:37 10m 8s
add section about comparing top markers with clinical covariates and … .github/workflows/benchmarks.yml #111: Commit 3b3dca1 pushed by borauyar
February 29, 2024 11:34 4m 5s main
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February 29, 2024 11:34 4m 5s
fix glitch in command .github/workflows/benchmarks.yml #110: Commit 4a5d328 pushed by borauyar
February 28, 2024 16:38 4m 26s main
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February 28, 2024 16:38 4m 26s
use basename to correct file naming .github/workflows/benchmarks.yml #109: Commit e20d5c1 pushed by borauyar
February 28, 2024 16:37 3m 58s main
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February 28, 2024 16:37 3m 58s
set kernel param .github/workflows/benchmarks.yml #108: Commit 90c54a5 pushed by borauyar
February 28, 2024 16:31 4m 9s main
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February 28, 2024 16:31 4m 9s
install kernel in GHA before running notebook:wq .github/workflows/benchmarks.yml #107: Commit b08362d pushed by borauyar
February 28, 2024 16:17 4m 24s main
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February 28, 2024 16:17 4m 24s
define github action for checking tutorials using papermill .github/workflows/benchmarks.yml #106: Commit 47e7a91 pushed by borauyar
February 28, 2024 16:08 4m 2s main
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February 28, 2024 16:08 4m 2s
Split read_graph into 3 separate fns: generic read, stringdb read and… .github/workflows/benchmarks.yml #105: Commit 15ec33e pushed by trsvchn
February 28, 2024 13:57 3m 55s main
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February 28, 2024 13:57 3m 55s
Fixes #50. Only ask for comma-separated variables names in CLI; for i… .github/workflows/benchmarks.yml #104: Commit 7be3e24 pushed by borauyar
February 28, 2024 10:23 3m 52s main
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February 28, 2024 10:23 3m 52s
don't expose DirectPredCNN to the user yet; in development mode .github/workflows/benchmarks.yml #103: Commit 654bdc5 pushed by borauyar
February 28, 2024 09:37 4m 5s main
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February 28, 2024 09:37 4m 5s
Merge pull request #55 from BIMSBbioinfo/survival .github/workflows/benchmarks.yml #102: Commit 0a01f18 pushed by borauyar
February 27, 2024 21:52 4m 11s main
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February 27, 2024 21:52 4m 11s
allow user to provide a set of features which restrict the analysis t… .github/workflows/benchmarks.yml #101: Commit 25dbbd4 pushed by borauyar
February 26, 2024 10:31 3m 55s main
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February 26, 2024 10:31 3m 55s
distinguish feature names and indices in variable names .github/workflows/benchmarks.yml #100: Commit b2c6543 pushed by borauyar
February 26, 2024 08:35 3m 59s main
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February 26, 2024 08:35 3m 59s
fix error with handling feature indices and feature names .github/workflows/benchmarks.yml #99: Commit 4edefbc pushed by borauyar
February 23, 2024 16:20 4m 10s main
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February 23, 2024 16:20 4m 10s
print feature logs for each layer into file .github/workflows/benchmarks.yml #98: Commit 9cf78aa pushed by borauyar
February 23, 2024 11:56 4m 12s main
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February 23, 2024 11:56 4m 12s
Fixes #48 and #45; check for potential errors in the input data .github/workflows/benchmarks.yml #97: Commit dca1ae1 pushed by borauyar
February 22, 2024 10:25 4m 29s main
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February 22, 2024 10:25 4m 29s
use correlation threshold instead of boolean .github/workflows/benchmarks.yml #96: Commit ebee6cd pushed by borauyar
February 22, 2024 09:19 3m 59s main
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February 22, 2024 09:19 3m 59s
move modality-based graph filtering to another function; improve log … .github/workflows/benchmarks.yml #95: Commit 36e736d pushed by borauyar
February 21, 2024 13:30 3m 59s main
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February 21, 2024 13:30 3m 59s