diff --git a/docs/utils.md b/docs/utils.md index 9bc52d3..a6a08e5 100644 --- a/docs/utils.md +++ b/docs/utils.md @@ -1,3 +1,3 @@ -# Network Modules +# Utility Functions ::: flexynesis.utils diff --git a/flexynesis/__main__.py b/flexynesis/__main__.py index a19a89e..4509207 100644 --- a/flexynesis/__main__.py +++ b/flexynesis/__main__.py @@ -18,8 +18,7 @@ def main(): Args: --data_path (str): Path to the folder with train/test data files. (Required) - --model_class (str): The kind of model class to instantiate. Choices are ["DirectPred", "GNN", "supervised_vae", - "MultiTripletNetwork", "CrossModalPred", "RandomForest", "SVM", "RandomSurvivalForest"]. (Required) + --model_class (str): The kind of model class to instantiate. Choices are ["DirectPred", "GNN", "supervised_vae", "MultiTripletNetwork", "CrossModalPred", "RandomForest", "SVM", "RandomSurvivalForest"]. (Required) --gnn_conv_type (str): If model_class is set to GNN, choose which graph convolution type to use. Choices are ["GC", "GCN", "SAGE"]. --target_variables (str): Which variables in 'clin.csv' to use for predictions, comma-separated if multiple. Optional if survival variables are not set to None. --batch_variables (str): Which variables in 'clin.csv' to use for data integration/batch correction, comma-separated if multiple. Optional.