define GHA for CrossModalPred

BIMSBbioinfo · Mar 17, 2024 · 379276e · 379276e
1 parent 883bd1a
commit 379276e
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/.github/workflows/benchmarks.yml b/.github/workflows/benchmarks.yml
@@ -89,6 +89,12 @@ jobs:
         conda activate my_env
         flexynesis --data_path dataset1 --model_class supervised_vae --target_variables Erlotinib,Crizotinib --fusion_type early --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types gex,cnv --outdir . --prefix erlotinib_svae --early_stop_patience 3 --use_loss_weighting True --evaluate_baseline_performance False
 
+    - name: Run CrossModalPred 
+      shell: bash -l {0}
+      run: |
+        conda activate my_env
+        flexynesis --data_path dataset1 --model_class CrossModalPred --target_variables Erlotinib --fusion_type intermediate --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types gex,cnv --input_layers gex --output_layers cnv --outdir . --prefix erlotinib_crossmodal --early_stop_patience 3 --use_loss_weighting True --evaluate_baseline_performance False
+
     - name: Run MultiTripletNetwork
       shell: bash -l {0}
       run: |