From 8b4de758abc7287e5241efeda682774175623596 Mon Sep 17 00:00:00 2001 From: Bora Uyar Date: Wed, 3 Jul 2024 20:24:55 +0200 Subject: [PATCH] update gnnearly benchmark run --- .github/workflows/benchmarks.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/benchmarks.yml b/.github/workflows/benchmarks.yml index bfbe631..007c4dd 100644 --- a/.github/workflows/benchmarks.yml +++ b/.github/workflows/benchmarks.yml @@ -105,4 +105,4 @@ jobs: shell: bash -l {0} run: | conda activate my_env - flexynesis --data_path dataset1 --model_class GNNEarly --target_variables Erlotinib --fusion_type intermediate --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types gex --outdir . --prefix erlotinib_direct --early_stop_patience 3 --use_loss_weighting False --evaluate_baseline_performance False --subsample 50 + flexynesis --data_path dataset1 --model_class GNNEarly --target_variables Erlotinib --fusion_type intermediate --hpo_iter 1 --features_top_percentile 50 --log_transform False --data_types gex,cnv --outdir . --prefix erlotinib_direct --early_stop_patience 3 --use_loss_weighting False --evaluate_baseline_performance False --subsample 50