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update test run for gnns
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borauyar committed Jul 6, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/benchmarks.yml
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Expand Up @@ -105,4 +105,4 @@ jobs:
shell: bash -l {0}
run: |
conda activate my_env
flexynesis --data_path dataset1 --model_class GNNEarly --target_variables Erlotinib --fusion_type intermediate --hpo_iter 1 --features_top_percentile 50 --log_transform False --data_types gex,cnv --outdir . --prefix erlotinib_direct --early_stop_patience 3 --use_loss_weighting False --evaluate_baseline_performance False --subsample 50
flexynesis --data_path dataset1 --model_class GNN --target_variables Erlotinib --fusion_type intermediate --hpo_iter 1 --features_top_percentile 50 --log_transform False --data_types gex,cnv --outdir . --prefix erlotinib_direct --early_stop_patience 3 --use_loss_weighting False --evaluate_baseline_performance False --subsample 50

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