fix issue with path to env

BIMSBbioinfo · Mar 2, 2024 · f59f86e · f59f86e
1 parent 586d3ec
commit f59f86e
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/.github/workflows/benchmarks.yml b/.github/workflows/benchmarks.yml
@@ -66,29 +66,29 @@ jobs:
     - name: Run DirectPred
       shell: bash -l {0}
       run: |
-        source ~/.venv/my_env/bin/activate
+        source ~/.venv/bin/activate
         flexynesis --data_path dataset1 --model_class DirectPred --target_variables Erlotinib --batch_variables Crizotinib --fusion_type early --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types gex,cnv --outdir . --prefix erlotinib_direct --early_stop_patience 3 --use_loss_weighting False --evaluate_baseline_performance False
 
     - name: Run DirectPred_TestSurvival
       shell: bash -l {0}
       run: |
-        source ~/.venv/my_env/bin/activate
+        source ~/.venv/bin/activate
         flexynesis --data_path lgggbm_tcga_pub_processed --model_class DirectPred --target_variables STUDY --fusion_type intermediate --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types mut,cna --outdir . --prefix lgg_surv --early_stop_patience 3 --use_loss_weighting False --evaluate_baseline_performance False --surv_event_var OS_STATUS --surv_time_var OS_MONTHS
 
     - name: Run supervised_vae
       shell: bash -l {0}
       run: |
-        source ~/.venv/my_env/bin/activate
+        source ~/.venv/bin/activate
         flexynesis --data_path dataset1 --model_class supervised_vae --target_variables Erlotinib,Crizotinib --fusion_type early --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types gex,cnv --outdir . --prefix erlotinib_svae --early_stop_patience 3 --use_loss_weighting True --evaluate_baseline_performance False
 
     - name: Run MultiTripletNetwork
       shell: bash -l {0}
       run: |
-        source ~/.venv/my_env/bin/activate
+        source ~/.venv/bin/activate
         flexynesis --data_path dataset2 --model_class MultiTripletNetwork --target_variables y --fusion_type early --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types gex,meth --outdir . --prefix msi_triplet --early_stop_patience 3 --evaluate_baseline_performance False
 
     - name: Run DirectPredGCNN
       shell: bash -l {0}
       run: |
-        source ~/.venv/my_env/bin/activate
+        source ~/.venv/bin/activate
         flexynesis --data_path dataset1 --model_class DirectPredGCNN --target_variables Erlotinib --batch_variables Crizotinib --fusion_type intermediate --hpo_iter 1 --features_min 50 --features_top_percentile 5 --log_transform False --data_types gex,cnv --outdir . --prefix erlotinib_direct --early_stop_patience 3 --use_loss_weighting False --evaluate_baseline_performance False