_pkgdown.yml

url: ~
template:
  bootstrap: 5
  bootswatch: flatly
  bslib:
    pkgdown-nav-height: 100px

home:
  links:
    - text: Browse source code
      href: https://github.com/BIMSBbioinfo/mergen
    - text: Report a bug
      href: https://github.com/BIMSBbioinfo/mergen/issues


navbar:
  structure:
    right: [search, github]
  components:
    github:
      icon: fa-github
      href: https://github.com/BIMSBbioinfo/mergen
      aria-label: GitHub

reference:
- title: "### Setting up an agent"
  desc: >
    Function for setting up an AI agent
  contents:
  - setupAgent
- title: "### Sending prompts"
  desc: >
    Functions for sending prompts to your agent
  contents:
  - sendPrompt
  - selfcorrect
  - runCodeInResponse
  - sampleResponse
- title: "### Manipulate agent's answer"
  desc: >
    Functions for manipulating the agents answer so code can be extracted, executed, filenames can be extracted etc. Some of these functions are internally used by others.
  contents:
  - clean_code_blocks
  - extractCode
  - executeCode
  - extractFilenames
  - fileHeaderPrompt
  - check_install
  - extractInstallPkg
  - promptContext