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forced rerun not possible with write-protected output #187

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alexg9010 opened this issue Oct 6, 2022 · 0 comments
Open

forced rerun not possible with write-protected output #187

alexg9010 opened this issue Oct 6, 2022 · 0 comments
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@alexg9010
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I defined requested the genome-prep files to become write-protected, to prohibit accidential re-evaluation of this long-running step. This also makes it safer to use shared genome folders.
However, what is quite annoying for quick dry-run-testing using a --forced run, is that the pipeline will always fail with a ProtectedOutputException since we are using snakemakes --forceall, -F, which forces the execution of the selected (or the first) rule and all rules it is dependent on regardless of already created output.

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I would like to keep the write-protection, but have the feeling that for the dev environment this feature has to be disabled.

@alexg9010 alexg9010 added the bug label Oct 6, 2022
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