setup.py

#!/usr/bin/env python

from distutils.core import setup

with open('superdsm/version.py') as fin:
    exec(fin.read(), globals())

setup(
    name='SuperDSM',
    version=VERSION,  # type: ignore  # noqa: F821
    description=(
        'SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for '
        'cell nuclei in fluorescence microscopy images and beyond.'
    ),
    author='Leonid Kostrykin',
    author_email='leonid.kostrykin@bioquant.uni-heidelberg.de',
    url='https://kostrykin.com',
    license='MIT',
    packages=['superdsm', 'superdsm._libs', 'superdsm._libs.sparse_dot_mkl'],
    python_requires='>=3.11',
    install_requires=[
        'numpy>=1.26,<2',
        'scipy>=1.13.1,<1.14',  # https://github.com/BMCV/SuperDSM/pull/20#issuecomment-2330922474
        'scikit-image>=0.24.0',
        'ipython>=7.31.1',
        'dill>=0.3.2',
        'ray>=0.8.7',
        'cvxopt>=1.3.2',
        'cvxpy>=1.5.3',
        'matplotlib>=3.0',
        'mkl>=2020.0',
        'imagecodecs>=2024.6.1',
        'repype>=1.0.0,<1.1',
    ],
)