mkdocs.yml

site_name: Single Nucleotide Variant Calling and Annotation
site_description: This contains all material for the Single Nucleotide Variant Calling and Annotation training module.
site_author: Authors
docs_dir: handout

#site_url: 'https://github.com/BPA-CSIRO-Workshops/cancer-module-snv'

copyright: '© The authors; 2017-'

#Documentation and theme
theme: material

# Options
extra:
  palette:
    primary: 'indigo'
    accent: 'light blue'

  feature:
    tabs: false

  site_favicon: 'media/logos/Bioplatforms-Australia-favicon2.png'

markdown_extensions:
    - admonition
    - smarty
    - tables
    - markdown_include.include
    - codehilite(linenums=True)
#    - codehilite
    - toc(permalink=true)
    - mdx_math
    - pymdownx.betterem(smart_enable=all)
    - pymdownx.caret
    - pymdownx.critic
    - pymdownx.inlinehilite
    - pymdownx.magiclink
    - pymdownx.mark
    - pymdownx.smartsymbols
    - pymdownx.superfences
    - pymdownx.tasklist(custom_checkbox=true)
    - pymdownx.tilde
    - pymdownx.details

extra_css:
    #- css/extra.css
    - css/details.css

extra_javascript:
    - https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML
    - js/details.js

pages:
- Home: index.md
- Handout: handout.md
- License: license.md