WARN org.bgee.pipeline.annotations.SimilarityAnnotation, January 2018 #25
Comments
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1.- UBERON:0002544 digit -> 'negative annotation on 32524 | Amniota' is a recent (2017) evidence (low confidence) challenging digit homology among Amniota, which is so far supposed (as far as I understand) to be accepted because digit homology on Tetrapoda is accepted (see evidence on Tetrapoda). I now added positive annotation on Amniota (medium confidence), instead of adding a fake negative annotation on Tetrapoda. |
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2.- UBERON:0009078 pessulus -> negative annotation on Passeriformes is low confidence, and there is also positive annotation (also low confidence) on Passeriformes, but positive annotation on Neognathae is medium confidence, so no reason to force a negative annotation on Neognathae |
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3.- UBERON:0002227, UBERON:0013731 TETRAPODA -> sounds to miss positive annotation on sub-taxons of Amphibia: Batrachia and Gymnophiona. -> so far, no change done, and just considered as a warning (no literature information to support or discard 'UBERON:0013731, UBERON:0002227 basilar papilla, spiral organ of cochlea' homology in Batrachia and in Gymnophiona) And also this book https://link.springer.com/book/10.1007%2F978-1-4419-8957-4 "It is apparent that, while the amniote descendants of the stem reptiles all inherited a rather simple hearing papilla largely supported by the basilar papilla, the ancestors of modern amphibians developed to separate epithelia. As Smotherman and Narins describe in Chapter 6, it is possible, perhaps even probable, that strictly speaking, neither of these epithelia is homologous with the basilar papilla of amniotes (in spite of one of them bearing the same name). Nonetheless, as the authors also point out, all of these epithelia originate during ontogeny from one common epithelium with the vestibular sensory patch. The long history of the amphibians since the development of a tympanic middle ear was obviously accompanied by the evolution of different papillar specializations in different amphibian groups. In the anuran amphibians, these papillae are well enough developed, though small, to support sophisticated acoustic communication behaviors." |
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4.- UBERON:0006866 terminal part of digestive tract -> so far there is no taxon constraint in UBERON:0006866 terminal part of digestive tract, but this information: So no way to put positive annotation on Cnidaria and Ctenophora (same taxon). Maybe to put positive annotation on Deuterostomia and Protosotmia (sub-taxon) Note: there is currently a consensus to have 'mouth' opening homologous in Bilaterian, with 'anus' having independent evolution. |
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5.- UBERON:0001052 rectum -> see 'UBERON:0006866 terminal part of digestive tract' at point 4.- above, closely related classes |
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6.- UBERON:0000992 ovary -> not possible to add positive annotation on Cnidaria (another sub-taxon of Metazoa) because: (paper to check |
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7.- UBERON:0001103 diaphragm -> other potential sub-taxon of Amniota is Saurospida "Crocodylians, mammals and turtles have all evolved accessory respiratory muscles that reduce or eliminate their reliance on costal aspiration. These are all sometimes called diaphragm muscles, presumably by analogy with the mammalian diaphragm muscle, but they are not homologous structures." Crocodylians and Turtles = Archelosauria (parent= Sauropsida) |
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8.- UBERON:0003078 epibranchial placode -> other potential sub-taxons are
-> 'Epibranchial placode homologues have also not been identified outside the vertebrates.' -> Negative annotation on 7711 Chordata was to report the fact that epibranchianl placode is a vertebrate structure, it would be difficult to have a specific reference for Cephalochordata and/or Tunicata, but if needed for pipeline purpose, I could add it, however here this could be an example of generation of error by 'artificial' annotation, if Uberon would consider 'epibranchial placode' with a taxon constraint on Vertebrate I understand that here I do not use NOT correctly..I do not have to put NOT on Chordata, just to conserve the positive annotation on Vertebrates, see issue #26 -> I now commented the line with NOT on Chordata |
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Items 9.- up to 21.-, correspond to warning type 3 in issue #24:
, I skip them now and go to warning type 4: (22.- up to 48.-.....very time consuming, brief review here) 22.-/23.- UBERON:0000014 zone of skin this double annotation is just to 'link' both terms, because both terms may be/were used in expression data annotation (potential inconsistency of the annotation, to check!) but maybe not necessary? |
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24.- UBERON:0000100, UBERON:0000931 | blastopore, proctodeum -> added annotation on UBERON:0000931 for 50557 | Insecta (just copy/paste the evidence for the double annotation) |
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25.- UBERON:0002038, UBERON:2000633 | substantia nigra, caudal tuberculum -> added annotation on UBERON:2000633 | caudal tuberculum for 32443 | Teleostei |
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26.- UBERON:2001427 anterior naris on 7776 | Gnathostomata (as the common ancestor of all fishes) -> added annotation UBERON:2001427 anterior naris |
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27.- UBERON:4000172 lepidotrichium -> added annotation of lepidotrichium on Actinopterygii with new reference PMID:20574421, but maybe needs further work here. see also https://onlinelibrary.wiley.com/doi/pdf/10.1080/00241160510013141 and 'Clock-face’ model of Thorogood (1991) |
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28.- UBERON:0015202 lymph heart -> added annotation on Vertebrate (copy/paste) |
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29.- and 30.- UBERON:0006567, UBERON:0003381 | right ventricle myocardium, cardiac muscle of right ventricle and 45.- and 46.- UBERON:0006566, UBERON:0003382 | left ventricle myocardium, cardiac muscle of left ventricle ->I skip here, because multiple annotation was done to map expression annotation on both terms, because they should be identical actually, see
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31.- CTENO:0000033 anal pore -> added annotation on 10197 | Ctenophora |
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32.- UBERON:0013731 basilar papilla -> added annotation on 8457 | Sauropsida (copy/paste) |
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33.- and 38.- UBERON:0011288 stomochord -> added annotation on 10219 | Hemichordata |
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34.- UBERON:0013477 blowhole -> annotation added on 9722 | Odontoceti (single blowhole) and on9761 | Mysticeti (paired blowhole) and an issue created for Chris |
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35.- UBERON:0002436 primary visual cortex -> annotation done on 314146 | Euarchontoglires with new reference |
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36.- UBERON:0014756 Wulst -> annotation done on 'birds' = Aves 8782 (copy/paste) |
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37.- UBERON:0002376 cranial muscle -> annotation done on 7776 | Gnathostomata (new reference) |
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39.- UBERON:0000024 forelimb wing -> added annotation on 32524 | Amniota (copy/paste) |
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40.- UBERON:0035602 collar nerve cord -> annotation done on 10220 | Enteropneusta (copy/paste) |
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41.- UBERON:0005305 thyroid follicle -> annotation done on 7742 | Vertebrata (identical ref but other evidence tag) |
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42.- CL:0000092 osteoclast -> annotation done on 7742 | Vertebrata (identical ref but other evidence tag) |
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43.- CL:0000453 Langerhans cell -> annotation done on 117571 | Euteleostomi (new reference) |
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44.- UBERON:0002048 lung -> currently there is a commented annotation on 7776 | Gnathostomata, which sounds ok but it is commented because there is an issue, see #701 about taxon constraint, MAYBE TO REMOVE THE COMMENT HERE ? |
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47.- and 48.- UBERON:0002049 vasculature ->this double annotation is just to 'link' both terms, because both terms may be/were used in expression data annotation (potential inconsistency of the annotation, to check!) but maybe not necessary? -> see also issue https://gitlab.isb-sib.ch/Bgee/expression-annotations/issues/17 |
this version should have Warning corrections (but not all), to further check after reprocessing by Valentine
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I close this issue, the status of the 'bgee_trans_similarity_annotations_edit.tsv' file as processed by Valentine on March 28 is the one for the current Bgee release. Next updates will be in issue #27 |
(to continue issue #12 in an updated way..)
ALL WARNINGS as given by Valentine
22KB Plain Text snippet created on January 16, 2018. This file is private.
1.-
18:53:14.389 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1682 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0002544] in taxon IDs: [32524] - There are also positive annotations in parent taxa for same HOM ID - Uberon ID, but some miss a corresponding negative annotation. Negative annotations potentially missing in taxa: [32523]
2.-
18:53:14.390 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1682 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0009078] in taxon IDs: [9126] - There are also positive annotations in parent taxa for same HOM ID - Uberon ID, but some miss a corresponding negative annotation. Negative annotations potentially missing in taxa: [8825]
3.-
18:53:14.494 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1697 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with no associated positive annotations in same taxon or in sub-taxa. Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0002227, UBERON:0013731] in taxon IDs: [8292] - There is no corresponding positive annotation for the same taxon, or for any sub-taxon.
4.-
18:53:14.494 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1697 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with no associated positive annotations in same taxon or in sub-taxa. Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0006866] in taxon IDs: [33213] - There is no corresponding positive annotation for the same taxon, or for any sub-taxon.
5.-
18:53:14.494 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1697 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with no associated positive annotations in same taxon or in sub-taxa. Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0001052] in taxon IDs: [33213] - There is no corresponding positive annotation for the same taxon, or for any sub-taxon.
6.-
18:53:14.593 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0000992] in taxon IDs: [33208]
7.-
18:53:14.593 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0001103] in taxon IDs: [32524]
8.-
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0003078] in taxon IDs: [7711]
9.-
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0006722] in taxon IDs: [32524]
10.-
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0002544] in taxon IDs: [32524]
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0002165] in taxon IDs: [7711]
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0001555] in taxon IDs: [33213]
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0000996] in taxon IDs: [32524]
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0001046] in taxon IDs: [33213]
18:53:14.594 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0007145] in taxon IDs: [32524]
18:53:14.595 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:4000160] in taxon IDs: [1338369, 8287]
18:53:14.595 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0003063] in taxon IDs: [7711]
18:53:14.595 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0000991] in taxon IDs: [33208]
18:53:14.595 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0001675] in taxon IDs: [7711]
18:53:14.595 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0000473] in taxon IDs: [33208]
18:53:14.595 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1711 checkAnnotations - Potentially missing annotation(s)! There exist negative annotation(s) with corresponding positive annotations in only ONE sub-taxon (most likely, there should be several). Negative annotation(s) for HOM ID - Uberon ID: HOM:0000007 - [UBERON:0001893] in taxon IDs: [7711]
22.-
18:53:14.597 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0000014 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0000014, UBERON:0002097], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
23.-
18:53:14.597 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0002097 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0000014, UBERON:0002097], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
24.-
18:53:14.597 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0000931 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0000100, UBERON:0000931], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
25.-
18:53:14.597 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:2000633 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002038, UBERON:2000633], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
26.-
18:53:14.598 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:2001427 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0005928, UBERON:2001427], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
27.-
18:53:14.598 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:4000172 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002544, UBERON:4000172], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
28.-
18:53:14.598 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0015202 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0011765, UBERON:0015202], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
29.-
18:53:14.598 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0003381 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0003381, UBERON:0006567], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
30.-
18:53:14.599 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0006567 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0003381, UBERON:0006567], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
31.-
18:53:14.599 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: CTENO:0000033 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[CTENO:0000033, UBERON:0001245], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
32.-
18:53:14.599 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0013731 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002227, UBERON:0013731], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
33.-
18:53:14.599 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0011288 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002328, UBERON:0011288], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
34.-
18:53:14.600 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0013477 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0005928, UBERON:0013477], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
35.-
18:53:14.600 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0002436 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002436, UBERON:0014756], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
36.-
18:53:14.600 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0014756 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002436, UBERON:0014756], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
37.-
18:53:14.600 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0002376 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0000948, UBERON:0002376], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
38.-
18:53:14.600 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0011288 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002328, UBERON:0011288, UBERON:0035147], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
39.-
18:53:14.600 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0000024 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0000024, UBERON:0002102], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
40.-
18:53:14.601 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0035602 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0001049, UBERON:0035602], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
41.-
18:53:14.601 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0005305 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0005305, UBERON:0006870], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
42.-
18:53:14.601 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: CL:0000092 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[CL:0000092, CL:0000453], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
43.-
18:53:14.601 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: CL:0000453 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[CL:0000092, CL:0000453], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
44.-
18:53:14.601 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0002048 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002048, UBERON:0006860], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
45.-
18:53:14.601 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0003382 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0003382, UBERON:0006566], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
46.-
18:53:14.602 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0006566 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0003382, UBERON:0006566], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
47.-
18:53:14.602 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0002049 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002049, UBERON:0007798], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
48.-
18:53:14.602 [main] WARN org.bgee.pipeline.annotations.SimilarityAnnotation 1733 checkAnnotations - An annotation uses multiple entity IDs, but there is no annotation for the individual entity: UBERON:0007798 - annotation: RawAnnotationBean [homId=HOM:0000007, homLabel=null, entityIds=[UBERON:0002049, UBERON:0007798], entityNames=null, ncbiTaxonId=0, taxonName=null, negated=false, cioId=null, cioLabel=null, supportingText=null, refId=null, refTitle=null, ecoId=null, ecoLabel=null, assignedBy=null, curator=null, curationDate=null]
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