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Some reference intergenic regions are full of N bp.
For instance for human, more than 80 reference intergenic regions are a sequence of 20.000 N.
As we provide reference intergenic sequences in our FTP for the BgeeCall package, we should remove these sequences.
We should maybe also remove all long N regions in intergenic regions.
One solution could be to remove all N regions bigger or equal to default kmer size of kallisto (31bp).
One initial 20.000bp reference intergenic region could then result to more than one reference intergenic region.
The text was updated successfully, but these errors were encountered:
Some reference intergenic regions are full of N bp.
For instance for human, more than 80 reference intergenic regions are a sequence of 20.000 N.
As we provide reference intergenic sequences in our FTP for the BgeeCall package, we should remove these sequences.
We should maybe also remove all long N regions in intergenic regions.
One solution could be to remove all N regions bigger or equal to default kmer size of kallisto (31bp).
One initial 20.000bp reference intergenic region could then result to more than one reference intergenic region.
The text was updated successfully, but these errors were encountered: