From 10bd8a1ef7734bc7647af53f0ab02c7e1c464c91 Mon Sep 17 00:00:00 2001
From: bbimber <bbimber@users.noreply.github.com>
Date: Fri, 8 Sep 2023 16:40:55 +0000
Subject: [PATCH] deploy: 649a21ccd911524be50c91ad977e3e513caaa6d2

---
 toolDoc/com_github_discvrseq_walkers_AnnotateNovelSites.html  | 2 +-
 toolDoc/com_github_discvrseq_walkers_AppendGenotypes.html     | 2 +-
 toolDoc/com_github_discvrseq_walkers_BackportLiftedVcf.html   | 2 +-
 toolDoc/com_github_discvrseq_walkers_ClinvarAnnotator.html    | 2 +-
 ...om_github_discvrseq_walkers_ClipOverlappingAlignments.html | 2 +-
 ...ithub_discvrseq_walkers_CrossSampleGenotypeComparison.html | 2 +-
 toolDoc/com_github_discvrseq_walkers_ExtendedFuncotator.html  | 2 +-
 .../com_github_discvrseq_walkers_FindGenomeDifferences.html   | 2 +-
 .../com_github_discvrseq_walkers_GenotypeFilterBySample.html  | 2 +-
 toolDoc/com_github_discvrseq_walkers_GroupCompare.html        | 2 +-
 toolDoc/com_github_discvrseq_walkers_ImmunoGenotyper.html     | 2 +-
 toolDoc/com_github_discvrseq_walkers_MergeFastqReads.html     | 2 +-
 toolDoc/com_github_discvrseq_walkers_MergeVariantSites.html   | 2 +-
 .../com_github_discvrseq_walkers_MergeVcfsAndGenotypes.html   | 2 +-
 .../com_github_discvrseq_walkers_MultiSourceAnnotator.html    | 2 +-
 .../com_github_discvrseq_walkers_MultipleAllelesAtLoci.html   | 2 +-
 ...b_discvrseq_walkers_OutputVariantsStartingInIntervals.html | 2 +-
 ...om_github_discvrseq_walkers_PrintReadBackedHaplotypes.html | 2 +-
 .../com_github_discvrseq_walkers_PrintReadsContaining.html    | 2 +-
 toolDoc/com_github_discvrseq_walkers_RemoveAnnotations.html   | 2 +-
 ...ub_discvrseq_walkers_SampleSpecificGenotypeFiltration.html | 2 +-
 toolDoc/com_github_discvrseq_walkers_SplitVcfBySamples.html   | 2 +-
 .../com_github_discvrseq_walkers_Summarize10xAlignments.html  | 2 +-
 .../com_github_discvrseq_walkers_VariantConcordanceScore.html | 2 +-
 toolDoc/com_github_discvrseq_walkers_VcfComparison.html       | 2 +-
 toolDoc/com_github_discvrseq_walkers_VcfFilterComparison.html | 2 +-
 toolDoc/com_github_discvrseq_walkers_VcfToLuceneIndexer.html  | 2 +-
 ...ub_discvrseq_walkers_annotator_DiscvrVariantAnnotator.html | 2 +-
 ...github_discvrseq_walkers_tagpcr_IntegrationSiteMapper.html | 2 +-
 toolDoc/com_github_discvrseq_walkers_variantqc_VariantQC.html | 2 +-
 toolDoc/index.html                                            | 4 ++--
 31 files changed, 32 insertions(+), 32 deletions(-)

diff --git a/toolDoc/com_github_discvrseq_walkers_AnnotateNovelSites.html b/toolDoc/com_github_discvrseq_walkers_AnnotateNovelSites.html
index 3621eeae..3d2d4dd2 100644
--- a/toolDoc/com_github_discvrseq_walkers_AnnotateNovelSites.html
+++ b/toolDoc/com_github_discvrseq_walkers_AnnotateNovelSites.html
@@ -1209,7 +1209,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_AppendGenotypes.html b/toolDoc/com_github_discvrseq_walkers_AppendGenotypes.html
index af2de9de..27076d95 100644
--- a/toolDoc/com_github_discvrseq_walkers_AppendGenotypes.html
+++ b/toolDoc/com_github_discvrseq_walkers_AppendGenotypes.html
@@ -990,7 +990,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_BackportLiftedVcf.html b/toolDoc/com_github_discvrseq_walkers_BackportLiftedVcf.html
index 371ea413..bc9c2df6 100644
--- a/toolDoc/com_github_discvrseq_walkers_BackportLiftedVcf.html
+++ b/toolDoc/com_github_discvrseq_walkers_BackportLiftedVcf.html
@@ -1001,7 +1001,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_ClinvarAnnotator.html b/toolDoc/com_github_discvrseq_walkers_ClinvarAnnotator.html
index 298bd882..1416810a 100644
--- a/toolDoc/com_github_discvrseq_walkers_ClinvarAnnotator.html
+++ b/toolDoc/com_github_discvrseq_walkers_ClinvarAnnotator.html
@@ -1000,7 +1000,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_ClipOverlappingAlignments.html b/toolDoc/com_github_discvrseq_walkers_ClipOverlappingAlignments.html
index 86f3f1d2..94337d4e 100644
--- a/toolDoc/com_github_discvrseq_walkers_ClipOverlappingAlignments.html
+++ b/toolDoc/com_github_discvrseq_walkers_ClipOverlappingAlignments.html
@@ -1005,7 +1005,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_CrossSampleGenotypeComparison.html b/toolDoc/com_github_discvrseq_walkers_CrossSampleGenotypeComparison.html
index 2c42e8cc..fbf1ecb5 100644
--- a/toolDoc/com_github_discvrseq_walkers_CrossSampleGenotypeComparison.html
+++ b/toolDoc/com_github_discvrseq_walkers_CrossSampleGenotypeComparison.html
@@ -1054,7 +1054,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_ExtendedFuncotator.html b/toolDoc/com_github_discvrseq_walkers_ExtendedFuncotator.html
index d0532f72..7ba7ea89 100644
--- a/toolDoc/com_github_discvrseq_walkers_ExtendedFuncotator.html
+++ b/toolDoc/com_github_discvrseq_walkers_ExtendedFuncotator.html
@@ -1350,7 +1350,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_FindGenomeDifferences.html b/toolDoc/com_github_discvrseq_walkers_FindGenomeDifferences.html
index db9076dd..083e7391 100644
--- a/toolDoc/com_github_discvrseq_walkers_FindGenomeDifferences.html
+++ b/toolDoc/com_github_discvrseq_walkers_FindGenomeDifferences.html
@@ -1065,7 +1065,7 @@ <h3><a name="--windowSize">--windowSize </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_GenotypeFilterBySample.html b/toolDoc/com_github_discvrseq_walkers_GenotypeFilterBySample.html
index a4934c98..fa7e785d 100644
--- a/toolDoc/com_github_discvrseq_walkers_GenotypeFilterBySample.html
+++ b/toolDoc/com_github_discvrseq_walkers_GenotypeFilterBySample.html
@@ -1007,7 +1007,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_GroupCompare.html b/toolDoc/com_github_discvrseq_walkers_GroupCompare.html
index 2db20a0c..d872d45c 100644
--- a/toolDoc/com_github_discvrseq_walkers_GroupCompare.html
+++ b/toolDoc/com_github_discvrseq_walkers_GroupCompare.html
@@ -1240,7 +1240,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_ImmunoGenotyper.html b/toolDoc/com_github_discvrseq_walkers_ImmunoGenotyper.html
index 6254ffa7..2b0c8495 100644
--- a/toolDoc/com_github_discvrseq_walkers_ImmunoGenotyper.html
+++ b/toolDoc/com_github_discvrseq_walkers_ImmunoGenotyper.html
@@ -1180,7 +1180,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_MergeFastqReads.html b/toolDoc/com_github_discvrseq_walkers_MergeFastqReads.html
index 19a56ca6..b2827a97 100644
--- a/toolDoc/com_github_discvrseq_walkers_MergeFastqReads.html
+++ b/toolDoc/com_github_discvrseq_walkers_MergeFastqReads.html
@@ -1062,7 +1062,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_MergeVariantSites.html b/toolDoc/com_github_discvrseq_walkers_MergeVariantSites.html
index 5fa0b68b..88ae5f5f 100644
--- a/toolDoc/com_github_discvrseq_walkers_MergeVariantSites.html
+++ b/toolDoc/com_github_discvrseq_walkers_MergeVariantSites.html
@@ -1093,7 +1093,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_MergeVcfsAndGenotypes.html b/toolDoc/com_github_discvrseq_walkers_MergeVcfsAndGenotypes.html
index 488a516b..c030ebff 100644
--- a/toolDoc/com_github_discvrseq_walkers_MergeVcfsAndGenotypes.html
+++ b/toolDoc/com_github_discvrseq_walkers_MergeVcfsAndGenotypes.html
@@ -1392,7 +1392,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_MultiSourceAnnotator.html b/toolDoc/com_github_discvrseq_walkers_MultiSourceAnnotator.html
index 52508777..42b5afa0 100644
--- a/toolDoc/com_github_discvrseq_walkers_MultiSourceAnnotator.html
+++ b/toolDoc/com_github_discvrseq_walkers_MultiSourceAnnotator.html
@@ -1159,7 +1159,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_MultipleAllelesAtLoci.html b/toolDoc/com_github_discvrseq_walkers_MultipleAllelesAtLoci.html
index e1ef19be..ad2d8621 100644
--- a/toolDoc/com_github_discvrseq_walkers_MultipleAllelesAtLoci.html
+++ b/toolDoc/com_github_discvrseq_walkers_MultipleAllelesAtLoci.html
@@ -1084,7 +1084,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_OutputVariantsStartingInIntervals.html b/toolDoc/com_github_discvrseq_walkers_OutputVariantsStartingInIntervals.html
index b6e3f3df..0fd54667 100644
--- a/toolDoc/com_github_discvrseq_walkers_OutputVariantsStartingInIntervals.html
+++ b/toolDoc/com_github_discvrseq_walkers_OutputVariantsStartingInIntervals.html
@@ -978,7 +978,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_PrintReadBackedHaplotypes.html b/toolDoc/com_github_discvrseq_walkers_PrintReadBackedHaplotypes.html
index 5a303991..c45685d7 100644
--- a/toolDoc/com_github_discvrseq_walkers_PrintReadBackedHaplotypes.html
+++ b/toolDoc/com_github_discvrseq_walkers_PrintReadBackedHaplotypes.html
@@ -1080,7 +1080,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_PrintReadsContaining.html b/toolDoc/com_github_discvrseq_walkers_PrintReadsContaining.html
index 9d757407..a2430a98 100644
--- a/toolDoc/com_github_discvrseq_walkers_PrintReadsContaining.html
+++ b/toolDoc/com_github_discvrseq_walkers_PrintReadsContaining.html
@@ -1247,7 +1247,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_RemoveAnnotations.html b/toolDoc/com_github_discvrseq_walkers_RemoveAnnotations.html
index 841bf983..b4ad3e49 100644
--- a/toolDoc/com_github_discvrseq_walkers_RemoveAnnotations.html
+++ b/toolDoc/com_github_discvrseq_walkers_RemoveAnnotations.html
@@ -1158,7 +1158,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_SampleSpecificGenotypeFiltration.html b/toolDoc/com_github_discvrseq_walkers_SampleSpecificGenotypeFiltration.html
index 663d75eb..5205b89c 100644
--- a/toolDoc/com_github_discvrseq_walkers_SampleSpecificGenotypeFiltration.html
+++ b/toolDoc/com_github_discvrseq_walkers_SampleSpecificGenotypeFiltration.html
@@ -1086,7 +1086,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_SplitVcfBySamples.html b/toolDoc/com_github_discvrseq_walkers_SplitVcfBySamples.html
index ea33f2fc..b6f9b8d4 100644
--- a/toolDoc/com_github_discvrseq_walkers_SplitVcfBySamples.html
+++ b/toolDoc/com_github_discvrseq_walkers_SplitVcfBySamples.html
@@ -1057,7 +1057,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_Summarize10xAlignments.html b/toolDoc/com_github_discvrseq_walkers_Summarize10xAlignments.html
index 781ddd36..d0661c30 100644
--- a/toolDoc/com_github_discvrseq_walkers_Summarize10xAlignments.html
+++ b/toolDoc/com_github_discvrseq_walkers_Summarize10xAlignments.html
@@ -957,7 +957,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_VariantConcordanceScore.html b/toolDoc/com_github_discvrseq_walkers_VariantConcordanceScore.html
index 655d2b0e..e7766cdd 100644
--- a/toolDoc/com_github_discvrseq_walkers_VariantConcordanceScore.html
+++ b/toolDoc/com_github_discvrseq_walkers_VariantConcordanceScore.html
@@ -1102,7 +1102,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_VcfComparison.html b/toolDoc/com_github_discvrseq_walkers_VcfComparison.html
index f97531f9..bf2e7d24 100644
--- a/toolDoc/com_github_discvrseq_walkers_VcfComparison.html
+++ b/toolDoc/com_github_discvrseq_walkers_VcfComparison.html
@@ -1183,7 +1183,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_VcfFilterComparison.html b/toolDoc/com_github_discvrseq_walkers_VcfFilterComparison.html
index f82b1d18..37698267 100644
--- a/toolDoc/com_github_discvrseq_walkers_VcfFilterComparison.html
+++ b/toolDoc/com_github_discvrseq_walkers_VcfFilterComparison.html
@@ -1062,7 +1062,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_VcfToLuceneIndexer.html b/toolDoc/com_github_discvrseq_walkers_VcfToLuceneIndexer.html
index d1125a05..9319075a 100644
--- a/toolDoc/com_github_discvrseq_walkers_VcfToLuceneIndexer.html
+++ b/toolDoc/com_github_discvrseq_walkers_VcfToLuceneIndexer.html
@@ -1251,7 +1251,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_annotator_DiscvrVariantAnnotator.html b/toolDoc/com_github_discvrseq_walkers_annotator_DiscvrVariantAnnotator.html
index 86346263..92a8b4ca 100644
--- a/toolDoc/com_github_discvrseq_walkers_annotator_DiscvrVariantAnnotator.html
+++ b/toolDoc/com_github_discvrseq_walkers_annotator_DiscvrVariantAnnotator.html
@@ -1305,7 +1305,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_tagpcr_IntegrationSiteMapper.html b/toolDoc/com_github_discvrseq_walkers_tagpcr_IntegrationSiteMapper.html
index 5a9d804d..80443d5b 100644
--- a/toolDoc/com_github_discvrseq_walkers_tagpcr_IntegrationSiteMapper.html
+++ b/toolDoc/com_github_discvrseq_walkers_tagpcr_IntegrationSiteMapper.html
@@ -1482,7 +1482,7 @@ <h3><a name="--write-default-descriptors">--write-default-descriptors </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/com_github_discvrseq_walkers_variantqc_VariantQC.html b/toolDoc/com_github_discvrseq_walkers_variantqc_VariantQC.html
index 15a6f026..4ea8f9ac 100644
--- a/toolDoc/com_github_discvrseq_walkers_variantqc_VariantQC.html
+++ b/toolDoc/com_github_discvrseq_walkers_variantqc_VariantQC.html
@@ -1304,7 +1304,7 @@ <h3><a name="--version">--version </a>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
diff --git a/toolDoc/index.html b/toolDoc/index.html
index b2c1d6c2..8cf2d6fc 100644
--- a/toolDoc/index.html
+++ b/toolDoc/index.html
@@ -13,7 +13,7 @@ <h1 id="top"><i class='<?php print ico::toolDocsIcon; ?>'></i>DISCVR-Seq Toolkit
             <div class="span6">
                 <div class="btn-group pull-right">
                     <a class="btn btn-warning dropdown-toggle" data-toggle="dropdown" href="#">
-                        Version 1.3.48
+                        Version 1.3.49
                         <span class="caret"></span>
                     </a>
                 </div>
@@ -230,7 +230,7 @@ <h4>Variant Manipulation</h4>
         	<a href="https://github.com/bimberlab/discvrseq/issues/">Issues/Help</a>
         </p>
 
-        <p class="version">DISCVR-Seq version 1.3.48 built at 02-08-2023 02:14:28.
+        <p class="version">DISCVR-Seq version 1.3.49 built at 08-09-2023 04:40:32.
         </p>
 
 </div></div>
\ No newline at end of file