Version 1.3.38

Full Changelog: 1.3.37...1.3.38

Version 1.3.37

What's Changed

• Ensure MultiSourceAnnotator removes pre-existing annotations prior by @bbimber in #260

Full Changelog: 1.3.36...1.3.37

Version 1.3.36

What's Changed

• Improve ExtendedFuncotator logging by @bbimber in #259

Full Changelog: 1.3.35...1.3.36

Version 1.3.35

What's Changed

• Allow MultiSourceAnnotator to have customized field lists by @bbimber in #257
• Update header lines for ClinvarAnnotator by @bbimber in #258

Full Changelog: 1.3.33...1.3.35

Version 1.3.33

What's Changed

• Update IMPACT fields by @bbimber in #253
• Bump docker/setup-buildx-action from 2.7.0 to 2.8.0 by @dependabot in #254
• Add tool to compare variants between sample groups by @bbimber in #255

Full Changelog: 1.3.32...1.3.33

Version 1.3.32

What's Changed

• Update field list on MultiSourceAnnotator by @bbimber in #249
• Drop xgboost dependency by @bbimber in #250
• Add header line for IMPACT annotation by @bbimber in #251
• Improve error logging by @bbimber in #252

Full Changelog: 1.3.31...1.3.32

Version 1.3.31

This adds a variant annotation to summarize SnpEff ANN into a simpler IMPAC field.

What's Changed

• Bump docker/build-push-action from 4.0.0 to 4.1.0 by @dependabot in #243
• Bump docker/setup-buildx-action from 2.6.0 to 2.7.0 by @dependabot in #246
• Bump docker/build-push-action from 4.1.0 to 4.1.1 by @dependabot in #245
• Add IMPACT annotation by @bbimber in #247
• Allow SampleSpecificGenotypeFiltration to run when the filter express… by @bbimber in #248

Full Changelog: 1.3.30...1.3.31

Version 1.3.30

This release includes minor updates to IntegrationSiteMapper to more precisely report the border of piggyBac-mediated insertions, and improvements to VCF annotation tools

What's Changed

• Allow transgene definitions to supply an offset value to adjust junction by @bbimber in #237
• Initial work to extend funcotator output by @bbimber in #233
• Add new test cases for genotype filter by @bbimber in #241
• Bump docker/login-action from 2.1.0 to 2.2.0 by @dependabot in #240
• Bump docker/setup-buildx-action from 2.5.0 to 2.6.0 by @dependabot in #238
• Bump docker/setup-qemu-action from 2.1.0 to 2.2.0 by @dependabot in #239
• Support more data sources in MultiSourceAnnotator by @bbimber in #242

Full Changelog: 1.3.29...1.3.30

Version 1.3.29

This is minor release, which updates the Apache Lucene version.

What's Changed

• Update lucene version by @hextraza in #234
• Increment lucene version by @bbimber in #235

Full Changelog: 1.3.28...1.3.29

Version 1.3.28

The primary enhancement in this version is updating the underlying GATK version, which allows DISCVR-seq to run against modern versions of java.

What's Changed

• Bump docker/setup-buildx-action from 2.4.1 to 2.5.0 by @dependabot in #229
• Update GATK version and support new java versions by @bbimber in #224
• Update java distributions by @bbimber in #231
• Bump peaceiris/actions-gh-pages from 3.9.2 to 3.9.3 by @dependabot in #232

Full Changelog: 1.3.27...1.3.28