Remove entrypoint from ParagraphStep

BimberLab · Dec 4, 2024 · d923842 · d923842
1 parent b9a0139
commit d923842
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/ParagraphStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/ParagraphStep.java
@@ -229,7 +229,6 @@ else if (!svVcf.exists())
 
                 DockerWrapper dockerWrapper = new DockerWrapper("ghcr.io/bimberlabinternal/paragraph:latest", ctx.getLogger(), ctx);
                 dockerWrapper.setTmpDir(new File(SequencePipelineService.get().getJavaTempDir()));
-                dockerWrapper.setEntryPoint("/bin/bash");
 
                 List<String> paragraphArgs = new ArrayList<>();
                 paragraphArgs.add("/opt/paragraph/bin/multigrmpy.py");