Fix deskew vol usage

core/lls_core/models/lattice_data.py

@@ -302,7 +302,7 @@ def check_incomplete_acquisition(self, volume: ArrayLike, time_point: int, chann
     @property
     def deskewed_volume(self) -> DaskArray:
         from dask.array import zeros
-        return zeros(self.deskew_vol_shape)
+        return zeros(self.derived.deskew_vol_shape)
 
     def _process_crop(self) -> Iterable[ImageSlice]:
         """

core/tests/test_deskew.py

@@ -1,28 +1,28 @@
-#filename and function name should start with "test_" when using pytest
-import pyclesperanto_prototype as cle 
-import numpy as np 
-from lls_core.models.lattice_data import LatticeData
-from xarray import DataArray
-import tempfile
-
-def test_deskew():
-
-    raw = np.zeros((5,5,5))
-    raw[2,0,0] = 10
-
-    deskewed = cle.deskew_y(raw,angle_in_degrees=60)
-
-    #np.argwhere(deskewed>0)
-    assert deskewed.shape == (4,8,5)
-    assert deskewed[2,2,0] == 0.5662433505058289
-
-def test_lattice_data_deskew():
-    raw = DataArray(np.zeros((5, 5, 5)), dims=["X", "Y", "Z"])
-    with tempfile.TemporaryDirectory() as tmpdir:
-        lattice = LatticeData(
-            input_image=raw,
-            physical_pixel_sizes = (1, 1, 1),
-            save_name="test",
-            save_dir=tmpdir
-        )
-        assert lattice.deskew_vol_shape == [2, 9, 5]
+#filename and function name should start with "test_" when using pytest
+import pyclesperanto_prototype as cle 
+import numpy as np 
+from lls_core.models.lattice_data import LatticeData
+from xarray import DataArray
+import tempfile
+
+def test_deskew():
+
+    raw = np.zeros((5,5,5))
+    raw[2,0,0] = 10
+
+    deskewed = cle.deskew_y(raw,angle_in_degrees=60)
+
+    #np.argwhere(deskewed>0)
+    assert deskewed.shape == (4,8,5)
+    assert deskewed[2,2,0] == 0.5662433505058289
+
+def test_lattice_data_deskew():
+    raw = DataArray(np.zeros((5, 5, 5)), dims=["X", "Y", "Z"])
+    with tempfile.TemporaryDirectory() as tmpdir:
+        lattice = LatticeData(
+            input_image=raw,
+            physical_pixel_sizes = (1, 1, 1),
+            save_name="test",
+            save_dir=tmpdir
+        )
+        assert lattice.derived.deskew_vol_shape == (2, 9, 5)