v1.0.0

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Minor bugfix

Fixed bug when reading PSFs: https://forum.image.sc/t/llszwidget-error-in-napari-lattice/79823

Major fixes: Better interpolation!

MAJOR UPDATES:

• BUG FIX: Orthogonal interpolation is enabled by default. Thanks to @haesleinhuepf for helping implement this in pyclesperanto-prototype clEsperanto/pyclesperanto_prototype#196. Thanks to @dpshepherd for his help as well. This will get rid of edge artefacts with highly anisotropic data.
• Changed GUI so GPU option and deskew angle are now within the Initialize button Dialog Box.
• Can now choose GPU option when Initializing napari plugin
• @DrLachie added support for running napari-lattice from the HPC, and fixed bugs in the batch processing section
• Updated notebooks

Tests:

• Fixed Github workflows so it should work with QT tests
• Added more tests for deskewing, cropping and testing batch processing using napari-lattice

### References for orthogonal interpolation:

• Sapoznik et al., 2020
• qi2lab-OPM

minor bugfix

• @DrLachie fixed a bug with workflows when using napari_lattice in the terminal
• Added dependabot so it keeps dependencies up to date in github actions

v0.2.4

• Fixed bugs with reading channels and time ranges
• Added support for using config files when running from terminal #12
• Added functionality to process single ImageJ roi files (.roi) files in addition to ImageJ roi zip files.

Minor:

• Logging instead of print statements

Had to update release from 0.2.2a to 0.2.4 as we wanted 0.2.4 to be the default install

Contributors: @pr4deepr and @DrLachie

v0.2.1-a

• Fixed edge artefacts when performing deconvolution using pycudadecon e87095d
• Fixed h5 saving so any channel range and time range can be saved 744e1b6
• Added example notebooks for deconvolution eff3901
• Cropping is no agnostic to skew direction. Should work on skew direction of X or Y.
• Fixed Not a tiff file error when reading psfs for czi 6d54ef7
• Widget for Preview Deskew is now collapsible
• Only the main Cropping Widget is scrollable.

v0.2.0

• Added napari spreadsheets as dependency to enable easy preview of tables when using "Preview Workflows" on workflows that return tables.
• Added wiki and examples for generating workflows using napari-assistant
• Added wiki and examples for using CellPose for segmenting lattice lightsheet data

napari_lattice v0.1.8

• Fixed bugs with deconvolution using pycudadecon
• Added deconvolution when using workflows. This should also be active when running napari-lattice in the terminal
• updated fsspec to fix czireader error

first_release

This is the first release for napari lattice plugin. It is still in experimental phase and will have breaking changes in future release.