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Read VisiumHD data through SpatialData / Support for Python 3.9 #316

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marcouderzo opened this issue Dec 18, 2024 · 0 comments
Open

Read VisiumHD data through SpatialData / Support for Python 3.9 #316

marcouderzo opened this issue Dec 18, 2024 · 0 comments

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@marcouderzo
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Hi,
I'd like to read a SpatialData object of a VisiumHD experiment

sdata = spatialdata.SpatialData.read('/sdata_clustering_008um_filtered')

though in the installation guide stLearn is indicated to be run on python 3.8 which is not compatible with SpatialData.
Is there a proper way to work with stLearn on VisiumHD data, starting with loading the data?
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