From 8150e7b313e5d3fdebcc23b559bdf0273a780b37 Mon Sep 17 00:00:00 2001
From: BjornFJohansson <bjornjobb@gmail.com>
Date: Sun, 27 Dec 2020 23:35:11 +0000
Subject: [PATCH] removed prints

---
 src/pygenome/__init__.py      | 28 ++++++++++++++--------------
 src/pygenome/_pickle_genes.py |  2 +-
 2 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/src/pygenome/__init__.py b/src/pygenome/__init__.py
index a80deb6..d9cf7a6 100644
--- a/src/pygenome/__init__.py
+++ b/src/pygenome/__init__.py
@@ -1,6 +1,7 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 
+import time             as _time
 import os               as _os
 import sys              as _sys
 import subprocess       as _subprocess
@@ -11,11 +12,13 @@
 import prettytable      as _prettytable
 import shutil           as _shutil
 import zipfile          as _zipfile
+import urllib           as _urllib
 from pygenome._pretty   import pretty_str  as _pretty_str
 from pkg_resources      import resource_filename as _resource_filename
 
-from pygenome import _version
+from  pygenome._data import _data_urls
 
+from pygenome import _version
 
 
 '''
@@ -42,7 +45,7 @@
 
 __version__ = _version.version
 del _version
-_sys.modules.pop("pygenome._version", None)
+#_sys.modules.pop("pygenome._version", None)
 
 # create config directory
 _os.environ["pygenome_config_dir"] = _os.getenv("pygenome_config_dir", _appdirs.user_config_dir("pygenome"))
@@ -187,8 +190,7 @@ def get_env():
     if not _os.path.isdir( data_dir ):
        raise
 
-from  pygenome._data import _data_urls
-import urllib as _urllib
+
 
 _missing_files=[]
 
@@ -198,8 +200,6 @@ def get_env():
         _logger.warning("file %s missing", _file_)
         _missing_files.append(_file_)
 
-import time as _time
-import os as _os
 
 if _missing_files:
     _shutil.copy( _resource_filename("pygenome", "Saccharomyces_cerevisiae.zip"), data_dir )
@@ -211,15 +211,15 @@ def get_env():
     zf.close()
 
 if not _os.path.exists(_os.path.join(data_dir, "primers.pickle")):
-    print("pickle primers start.")
+    #print("pickle primers start.")
     from pygenome._pickle_primers import pickle_primers
     pickle_primers()
-    print("pickle primers done.")
+    #print("pickle primers done.")
 if not _os.path.exists(_os.path.join(data_dir, "not_done.pickle")):
-    print("pickle primers.")
+    #print("pickle primers.")
     from pygenome._pickle_primers import pickle_orfs_not_deleted
     pickle_orfs_not_deleted()
-    print("pickle primers done.")
+    #print("pickle primers done.")
 
 _do_pickle_lists = False
 
@@ -237,12 +237,12 @@ def get_env():
 
 
 if _do_pickle_lists:
-    print("pickle lists start.")
+    #print("pickle lists start.")
     from pygenome._pickle_lists import _pickle_lists
     _pickle_lists()
-    print("pickle lists done.")
+    #print("pickle lists done.")
 if not _os.path.exists(_os.path.join(data_dir,"stdgene.pickle")) or not _os.path.exists(_os.path.join(data_dir,"sysgene.pickle")):
-    print("pickle locus list start.")
+    #print("pickle locus list start.")
     from pygenome._pickle_genes import _pickle_genes
     _pickle_genes()
-    print("pickle locus list done.")
+    #print("pickle locus list done.")
diff --git a/src/pygenome/_pickle_genes.py b/src/pygenome/_pickle_genes.py
index f0ad689..01ff024 100644
--- a/src/pygenome/_pickle_genes.py
+++ b/src/pygenome/_pickle_genes.py
@@ -30,7 +30,7 @@ def _pickle_genes():
     for _f in _feature_list:
         sysgene[_f] = Gene(_f)
 
-    print("Pickle standard gene names.")
+    #print("Pickle standard gene names.")
     for _f,_g in list(_standard_to_systematic.items()):
         stdgene[_f] = Gene(_g)